Construct: ORF ccsbBroadEn_12075
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008913.1_s300c1, BRDN0000398239
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IL17RD (54756)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54756 | IL17RD | interleukin 17 receptor D | NM_001318864.1 | 99.8% | 99.8% | 228T>C;332C>T;1099T>C |
| 2 | human | 54756 | IL17RD | interleukin 17 receptor D | XM_011533849.2 | 99.8% | 99.8% | 228T>C;332C>T;1099T>C |
| 3 | human | 54756 | IL17RD | interleukin 17 receptor D | XM_005265238.4 | 83.5% | 83.5% | (many diffs) |
| 4 | human | 54756 | IL17RD | interleukin 17 receptor D | NM_017563.5 | 80.3% | 80.3% | (many diffs) |
| 5 | mouse | 171463 | Il17rd | interleukin 17 receptor D | XM_006518668.2 | 83.2% | 84.7% | (many diffs) |
| 6 | mouse | 171463 | Il17rd | interleukin 17 receptor D | NM_134437.3 | 67.1% | 68.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1854
- ORF length:
- 1785
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAATCTCAA CCTTTCCTGA ATATGAAATT TGAAACGGAT TATTTCGTAA 121 AGGTTGTCCC TTTTCCTTCC ATTAAAAACG AAAGCAATTA CCACCCTTTC TTCTTTAGAA 181 CCCGAGCCTG TGACCTGTTG TTACAGCCGG ACAATCTAGC TTGTAAACCC TTCTGGAAGC 241 CTCGGAACCT GAACATCAGC CAGCATGGCT CGGACATGCA GGTGTCCTTC GACCACGCAC 301 CGCACAACTT CGGCTTCCGT TTCTTCTATC TTCACTACAA GCTCAAGCAC GAAGGACCTT 361 TCAAGCGAAA GACCTGTAAG CAGGAGCAAA CTACAGAGAT GACCAGCTGC CTCCTTCAAA 421 ATGTTTCTCC AGGGGATTAT ATAATTGAGC TGGTGGATGA CACTAACACA ACAAGAAAAG 481 TGATGCATTA TGCCTTAAAG CCAGTGCACT CCCCGTGGGC CGGGCCCATC AGAGCCGTGG 541 CCATCACAGT GCCACTGGTA GTCATATCGG CATTCGCGAC GCTCTTCACT GTGATGTGCC 601 GCAAGAAGCA ACAAGAAAAT ATATATTCAC ATTTAGATGA AGAGAGCTCT GAGTCTTCCA 661 CATACACTGC AGCACTCCCA AGAGAGAGGC TCCGGCCGCG GCCGAAGGTC TTTCTCTGCT 721 ATTCCAGTAA AGATGGCCAG AATCACATGA ATGTCGTCCA GTGTTTCGCC TACTTCCTCC 781 AGGACTTCTG TGGCTGTGAG GTGGCTCTGG ACCTGTGGGA AGACTTCAGC CTCTGTAGAG 841 AAGGGCAGAG AGAATGGGTC ATCCAGAAGA TCCACGAGTC CCAGTTCATC ATTGTGGTTT 901 GTTCCAAAGG TATGAAGTAC TTTGTGGACA AGAAGAACTA CAAACACAAA GGAGGTGGCC 961 GAGGCTCGGG GAAAGGAGAG CTCTTCCTGG TGGCGGTGTC AGCCATTGCC GAAAAGCTCC 1021 GCCAGGCCAA GCAGAGTTCG TCCGCGGCGC TCAGCAAGTT TATCGCCGTC TACTTTGATT 1081 ATTCCTGCGA GGGAGACGTC CCCGGTATCC TAGACCTGAG TACCAAGTAC AGACTCATGG 1141 ACAATCTTCC TCAGCTCTGT TCCCACCTGC ACTCCCGAGA CCACGGCCTC CAGGAGCCGG 1201 GGCAGCACAC GCGACAGGGC AGCAGAAGGA ACTACTTCCG GAGCAAGTCA GGCCGGTCCC 1261 TATACGTCGC CATTTGCAAC ATGCACCAGT TTATTGACGA GGAGCCCGAC TGGTTCGAAA 1321 AGCAGTTCGT TCCCTTCCAT CCTCCTCCAC TGCGCTACCG GGAGCCAGTC TTGGAGAAAT 1381 TTGATTCGGG CTTGGTTTTA AATGATGTCA TGTGCAAACC AGGGCCTGAG AGTGACTTCT 1441 GCCTAAAGGT AGAGGCGGCT GTTCTTGGGG CAACCGGACC AGCCGACTCC CAGCACGAGA 1501 GTCAGCATGG GGGCCTGGAC CAAGACGGGG AGGCCCGGCC TGCCCTTGAC GGTAGCGCCG 1561 CCCTGCAACC CCTGCTGCAC ACGGTGAAAG CCGGCAGCCC CTCGGACATG CCGCGGGACT 1621 CAGGCATCTA TGACTCGTCT GTGCCCTCAT CCGAGCTGTC TCTGCCACTG ATGGAAGGAC 1681 TCTCGACGGA CCAGACAGAA ACGTCTTCCC TGACGGAGAG CGTGTCCTCC TCTTCAGGCC 1741 TGGGTGAGGA GGAACCTCCT GCCCTTCCTT CCAAGCTCCT CTCTTCTGGG TCATGCAAAG 1801 CAGATCTTGG TTGCCGCAGC TACACTGATG AACTCCACGC GGTCGCCCCT TTGTTGCCAA 1861 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac