Transcript: Human XM_011533849.2

PREDICTED: Homo sapiens interleukin 17 receptor D (IL17RD), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
IL17RD (54756)
Length:
8539
CDS:
341..2128

Additional Resources:

NCBI RefSeq record:
XM_011533849.2
NBCI Gene record:
IL17RD (54756)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011533849.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058648 CCGGACAATCTAGCTTGTAAA pLKO.1 479 CDS 100% 13.200 18.480 N IL17RD n/a
2 TRCN0000058650 GCCGCAAGAAGCAACAAGAAA pLKO.1 870 CDS 100% 5.625 7.875 N IL17RD n/a
3 TRCN0000058652 CGGTCCCTATACGTCGCCATT pLKO.1 1526 CDS 100% 1.350 1.890 N IL17RD n/a
4 TRCN0000421115 CTGAAAGGATTTCGGGTAATA pLKO_005 230 5UTR 100% 13.200 9.240 N IL17RD n/a
5 TRCN0000419039 GAAACGGATTATTTCGTAAAG pLKO_005 374 CDS 100% 10.800 7.560 N IL17RD n/a
6 TRCN0000058651 CCAGTCTTGGAGAAATTTGAT pLKO.1 1637 CDS 100% 5.625 3.938 N IL17RD n/a
7 TRCN0000058649 CCGTTTCTTCTATCTTCACTA pLKO.1 589 CDS 100% 4.950 3.465 N IL17RD n/a
8 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 7914 3UTR 100% 4.950 2.475 Y ORAI2 n/a
9 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 7904 3UTR 100% 13.200 6.600 Y IQCC n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 6172 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 7911 3UTR 100% 4.950 2.475 Y LOC339059 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 6172 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011533849.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12075 pDONR223 100% 99.8% 99.8% None 228T>C;332C>T;1099T>C n/a
2 ccsbBroad304_12075 pLX_304 0% 99.8% 99.8% V5 228T>C;332C>T;1099T>C n/a
3 TRCN0000479937 TGTCCGCTGATTATCTAATTTAGT pLX_317 21.3% 99.8% 99.8% V5 228T>C;332C>T;1099T>C n/a
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