Construct: ORF ccsbBroadEn_12098
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007549.1_s300c1, BRDN0000393574
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ELP6 (54859)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54859 | ELP6 | elongator acetyltransferase... | NM_001031703.3 | 99.2% | 96.2% | 765_766insT;798_799insTGACC |
| 2 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_017006669.1 | 96.3% | 93.4% | 524_547del;789_790insT;822_823insTGACC |
| 3 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_024453608.1 | 92.6% | 89.5% | (many diffs) |
| 4 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_005265241.4 | 80.9% | 73.1% | (many diffs) |
| 5 | human | 54859 | ELP6 | elongator acetyltransferase... | NM_001363957.1 | 72% | 69% | 0_1ins219;546_547insT;579_580insTGACC |
| 6 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_011533851.3 | 70.1% | 55.5% | (many diffs) |
| 7 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_011533852.3 | 67% | 51.1% | (many diffs) |
| 8 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_011533853.3 | 64.8% | 50.2% | (many diffs) |
| 9 | human | 54859 | ELP6 | elongator acetyltransferase... | XR_001740186.1 | 57.9% | (many diffs) | |
| 10 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_011533854.3 | 55.2% | 37.3% | (many diffs) |
| 11 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_011533856.3 | 55.2% | 37.3% | (many diffs) |
| 12 | human | 54859 | ELP6 | elongator acetyltransferase... | XM_011533857.3 | 55.2% | 37.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 870
- ORF length:
- 804
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT CGTGGAACTT AATAACCTGC TTAACACCAC CCCCGACAGG GCGGAGCAGG 121 GGAAACTGAC TCTACTCTGT GATGCCAAGA CAGATGGGAG TTTCCTTGTA CACCACTTTC 181 TCTCCTTCTA TCTCAAAGCT AATTGTAAAG TCTGCTTTGT GGCACTCATC CAGTCCTTCA 241 GCCACTACAG TATCGTGGGA CAGAAGCTGG GTGTCAGCCT GACCATGGCG CGGGAGCGTG 301 GGCAGCTTGT GTTCCTTGAG GGACTCAAGT CTGCAGTGGA CGTCGTCTTC CAGGCTCAAA 361 AGGAGCCACA CCCCCTGCAG TTTCTCAGGG AGGCTAATGC TGGGAACTTG AAACCATTGT 421 TTGAGTTTGT ACGGGAGGCC CTGAAGCCAG TAGACAGTGG AGAGGCTCGG TGGACGTACC 481 CGGTGCTGTT GGTGGACGAC CTCAGTGTGC TCCTGAGCCT GGGCATGGGG GCGGTGGCTG 541 TGCTAGACTT CATTCACTAC TGCAGAGCCA CCGTGTGCTG GGAACTAAAG GGAAACATGG 601 TGGTCCTTGT GCACGACAGT GGAGATGCGG AGGATGAGGA GAATGACATC CTGCTGAATG 661 GCCTCAGTCA TCAGAGCCAT CTGATACTGC GGGCTGAGGG CCTGGCCACT GGCTTCTGCA 721 GGGATGTGCA CGGGCAGCTG AGGATCCTGT GGAGGAGACC ATCGCAGCCC GCAGTCCACC 781 GGGATCAGAG CTTCACTTAC CAGTATAAGA TACAGGACAA AAGCGTGTCC TTTTTTTGCC 841 AAAGGAATGT CTCCTGCTGT TCTGTGACCT GCCCAACTTT CTTGTACAAA GTtggcatta 901 taagaaagca ttgcttatca atttgttgca acgaac