Construct: ORF ccsbBroadEn_12125
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017717.1_s300c1, BRDN0000395704
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTC12 (54970)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017950.2 | 95.3% | 93.4% | (many diffs) |
| 2 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017949.2 | 95.1% | 93.1% | (many diffs) |
| 3 | human | 54970 | TTC12 | tetratricopeptide repeat do... | NM_017868.4 | 95% | 92% | (many diffs) |
| 4 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_024448595.1 | 95% | 92% | (many diffs) |
| 5 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017948.2 | 94.2% | 92.5% | (many diffs) |
| 6 | human | 54970 | TTC12 | tetratricopeptide repeat do... | NM_001318533.2 | 94.2% | 91.3% | (many diffs) |
| 7 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017947.2 | 92.6% | 92.5% | (many diffs) |
| 8 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_005271604.3 | 92.2% | 92.1% | (many diffs) |
| 9 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017943.2 | 92.2% | 92.1% | (many diffs) |
| 10 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017944.2 | 92.2% | 92.1% | (many diffs) |
| 11 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017945.1 | 92.2% | 92.1% | (many diffs) |
| 12 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_017017946.1 | 92.2% | 92.1% | (many diffs) |
| 13 | human | 54970 | TTC12 | tetratricopeptide repeat do... | NM_001352037.2 | 91.6% | 88.6% | (many diffs) |
| 14 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_024448594.1 | 88.7% | 83.9% | (many diffs) |
| 15 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XR_001747914.2 | 88.5% | (many diffs) | |
| 16 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_024448596.1 | 86.7% | 83.6% | (many diffs) |
| 17 | human | 54970 | TTC12 | tetratricopeptide repeat do... | NR_147891.2 | 86.2% | 1_51del;268A>C;2248_2544del | |
| 18 | human | 54970 | TTC12 | tetratricopeptide repeat do... | NM_001352038.2 | 74.6% | 71.9% | (many diffs) |
| 19 | human | 54970 | TTC12 | tetratricopeptide repeat do... | XM_024448597.1 | 73.1% | 72.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2262
- ORF length:
- 2196
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGCTGATAAA GAGAAAGATT TGCAGAAATT TCTTAAAAAT GTGGATGAAA 121 TCTCCAATTT AATTCAGGAG ATGAATTCTG ATGACCCAGT TGTGCAACAG AAAGCTGTCC 181 TGGAGACAGA AAAGAGACTA CTGCTTATGG AGGAAGACCA GGAGGAGGAT GAATGCAGGA 241 CCACCTTGAA CAAGACTATG ATCAGTCCTC CACAAACTGC TCTGAAGAGT GCAGAAGAAA 301 TAAACTCAGA GGCCTTCTTG GCATCTGTGG AGAAGGATGC AAAGGAACGA GCCAAGAGAA 361 GAAGGGAAAA CAAAGTCTTG GCGGATGCCC TAAAAGAAAA AGGGAATGAA GCATTTGCTG 421 AAGGCAATTA TGAAACAGCT ATCCTGCGCT ACAGTGAGGG TTTGGAGAAG CTGAAGGACA 481 TGAAAGTGCT GTACACCAAC CGAGCCCAGG CTTATATGAA ACTTGAGGAC TATGAGAAGG 541 CACTGGTGGA TTGTGAGTGG GCTCTCAAGT GTGATGAAAA ATGCACAAAA GCATATTTTC 601 ACATGGGAAA AGCCAACCTG GCCCTGAAGA ACTACAGTGT GTCTAGAGAG TGTTATAAGA 661 AGATCTTAGA AATAAACCCC AAGCTGCAAA CCCAGGTGAA AGGTTACCTG AATCAAGTAG 721 ATCTTCAGGA AAAAGCAGAC CTTCAAGAAA AGGAAGCCCA CGAACTGCTG GATTCAGGAA 781 AGAACACAGC CGTGACCACC AAGAACCTCC TGGAGACCCT TTCCAAGCCT GACCAGATCC 841 CCTTGTTCTA TGCTGGGGGG ATTGAGATCC TGACTGAAAT GATAAATGAG TGCACAGAAC 901 AAACTTTATT CAGAATGCAC AATGGATTTA GTATCATCAG TGACAACGAG GTCATAAGAA 961 GGTGTTTTTC CACAGCAGGA AATGATGCAG TTGAAGAAAT GGTCTGTGTG TCTGTTCTCA 1021 AGCTCTGGCA AGCAGTGTGC AGCAGGAACG AGGAAAACCA GCGTGTGCTA GTGATACACC 1081 ATGACAGGGC CAGGCTGTTG GCCGCCCTCT TGTCCTCCAA GGTCCTGGCC ATCCGGCAGC 1141 AGAGCTTTGC CCTGCTGCTG CATCTCGCCC AGACTGAGAG CGGACGGAGC CTGATCATCA 1201 ACCACCTTGA CCTGACCAGA TTATTGGAAG CGCTGGTGTC ATTTCTTGAT TTCTCGGATA 1261 AGGAGGCCAA CACTGCTATG GGACTGTTCA CAGACTTGGC TCTGGAAGAA AGATTCCAAG 1321 TCTGGTTCCA GGCCAACCTT CCAGGTGTTC TCCCTGCACT CACAGGCGTT CTGAAGACAG 1381 ATCCCAAGGT AAGCAGCTCC TCGGCTCTGT GCCAGTGCAT TGCCATCATG GGAAACCTCA 1441 GTGCTGAGCC CACTACCCGA AGACACATGG CGGCCTGTGA GGAATTTGGG GATGGCTGCT 1501 TGAGCCTCCT GGCCAGGTGT GAGGAGGATG TGGACCTGTT CAGAGAGGTT ATCTACACAC 1561 TCCTGGGACT CATGATGAAC CTGTGTCTTC AGGCTCCCTT TGTCTCTGAG GTTTGGGCTG 1621 TGGAGGTGAG CAGAAGGTGC CTGTCTTTAC TAAACAGCCA GGATGGAGGA ATCCTGACAA 1681 GAGCTGCTGG TGTTCTGAGC CGGACCCTTT CTTCCTCTCT GAAAATTGTT GAGGAGGCCT 1741 TGCGAGCAGG AGTGGTAAAG AAAATGATGA AATTCCTGAA GACAGGAGGT GAGACTGCAT 1801 CACGTTATGC TATAAAGATA CTAGCTATCT GCACGAATAG TTATCATGAA GCTCGGGAAG 1861 AAGTAATAAG ACTGGATAAA AAGTTGAGCG TTATGATGAA GCTGCTCAGC TCGGAGGATG 1921 AGGTTCTGGT GGGCAACGCT GCCCTCTGCC TTGGTAACTG CATGGAGGTG CCCAACGTTG 1981 CGTCTTCCCT GCTAAAGACG GACCTTTTGC AGGTCTTGTT AAAGCTTGCA GGCAGTGACA 2041 CACAGAAGAC GGCCGTGCAG GTGAACGCAG GCATTGCTCT GGGGAAGCTG TGCACAGCTG 2101 AGCCCAGAGT GCCTGCCGAG AGCAGTCATC TCCAATTTGG AAGAGAGTCT GCTGCACCTG 2161 AAGCTCTGTC TCCTCGCAGG TGGGAAGAGA TGTTTCACAT GCTAGTATTC TCCCTCTCCA 2221 GTGTGGATCC ACCCCCGCCA CCGCCCCAAA CTTGTTACCC CTACCCAACT TTCTTGTACA 2281 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac