Construct: ORF ccsbBroadEn_12136

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000081.1_s300c1, BRDN0000394826
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRPF39 (55015)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55015 PRPF39 pre-mRNA processing factor 39 NM_017922.4 94% 94% 1_120del
2 mouse 328110 Prpf39 pre-mRNA processing factor 39 NM_177806.3 86.7% 88.4% (many diffs)
3 mouse 328110 Prpf39 pre-mRNA processing factor 39 XM_006516026.3 80% 80.1% (many diffs)
4 mouse 328110 Prpf39 pre-mRNA processing factor 39 XM_006516027.3 80% 80.1% (many diffs)
5 mouse 328110 Prpf39 pre-mRNA processing factor 39 XM_006516028.3 80% 80.1% (many diffs)
6 mouse 328110 Prpf39 pre-mRNA processing factor 39 XM_017315120.1 80% 80.1% (many diffs)
7 mouse 328110 Prpf39 pre-mRNA processing factor 39 XM_006516029.3 67.1% 67.2% (many diffs)
8 mouse 328110 Prpf39 pre-mRNA processing factor 39 XM_006516031.2 50.4% 48.9% (many diffs)
9 mouse 328110 Prpf39 pre-mRNA processing factor 39 XR_001780462.1 41.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1956
ORF length:
1887
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAACAGTCA CCTGATGACT CTCCCAATGT GAATGCATCT ACAGAAGAAA
121CTGAAATGGC AAGTGCTGTG GACCTTCCAG TGACGCTGAC AGAAACAGAA GCAAATTTCC
181CTCCAGAATA TGAAAAATTT TGGAAAACTG TAGAAAATAA TCCTCAGGAT TTTACAGGCT
241GGGTATATTT GCTTCAATAT GTAGAACAGG AGAATCACTT GATGGCTGCC AGGAAGGCAT
301TTGACAGATT TTTCATACAC TATCCGTATT GCTATGGTTA CTGGAAAAAG TATGCAGACC
361TTGAAAAGCG GCACGACAAC ATTAAACCAT CAGATGAGGT TTATCGGCGG GGGCTTCAGG
421CAATACCTCT TAGTGTTGAC CTTTGGATAC ATTATATAAA CTTCTTAAAA GAAACATTGG
481ACCCTGGTGA TCCTGAGACA AACAATACAA TAAGAGGAAC TTTTGAGCAT GCTGTTCTAG
541CTGCAGGAAC AGATTTCCGT TCTGACAGAC TGTGGGAAAT GTATATAAAC TGGGAAAATG
601AGCAGGGAAA CCTGAGAGAA GTTACAGCTA TATATGATCG TATTCTTGGT ATTCCAACAC
661AGCTGTATAG TCATCATTTT CAGAGATTTA AAGAACATGT ACAGAATAAT TTGCCTAGAG
721ATCTTTTAAC TGGTGAACAG TTTATTCAGT TGCGAAGGGA ATTAGCTTCT GTAAATGGTC
781ATAGTGGTGA TGATGGTCCT CCTGGTGATG ATCTACCATC GGGAATTGAA GACATAACCG
841ATCCTGCAAA GCTAATTACA GAAATAGAAA ACATGAGACA TAGAATCATT GAGATTCATC
901AAGAAATGTT TAATTATAAT GAGCATGAAG TTAGTAAAAG GTGGACATTT GAAGAAGGTA
961TTAAAAGACC TTACTTTCAT GTGAAACCTT TGGAAAAGGC ACAACTAAAA AACTGGAAAG
1021AATACTTAGA ATTTGAAATT GAAAATGGGA CTCATGAACG AGTTGTGGTT CTCTTTGAAA
1081GATGTGTCAT ATCATGTGCC CTCTATGAGG AGTTTTGGAT TAAGTATGCC AAGTACATGG
1141AAAACCATAG CATTGAAGGA GTGAGGCATG TCTTCAGCAG AGCTTGTACT ATACATCTCC
1201CAAAGAAACC CATGGTGCAT ATGCTTTGGG CAGCTTTTGA GGAACAGCAG GGTAATATTA
1261ATGAAGCCAG GAATATCTTG AAAACATTTG AAGAATGTGT TCTAGGATTG GCAATGGTTC
1321GTTTACGAAG AGTAAGTTTA GAACGACGGC ATGGAAATCT GGAAGAAGCT GAACATTTGC
1381TTCAGGATGC CATTAAGAAT GCCAAATCAA ATAATGAATC TTCATTTTAT GCTGTCAAAC
1441TAGCCCGGCA TCTTTTCAAA ATACAGAAAA ACCTTCCAAA ATCAAGAAAG GTGCTTTTGG
1501AAGCAATCGA AAGAGACAAA GAGAACACAA AGTTATACCT CAATTTACTT GAAATGGAAT
1561ATAGTGGTGA CCTCAAACAA AATGAAGAAA ATATCCTAAA TTGTTTTGAC AAAGCTGTAC
1621ATGGTTCATT ACCTATTAAA ATGAGAATTA CATTTTCTCA GAGAAAAGTG GAATTTCTTG
1681AAGATTTTGG TTCCGATGTT AATAAGCTTC TGAATGCTTA TGATGAACAT CAAACACTCC
1741TGAAAGAACA GGATTCTTTA AAAAGGAAAG CAGAAAATGG ATCAGAAGAA CCAGAGGAAA
1801AGAAAGCACA TACAGAAGAT ACAACTTCAT CATCTACACA GATGATTGAT GGTGATTTAC
1861AGGCAAACCA AGCTGTATAT AATTATAGTG CGTGGTATCA ATACAATTAT CAGAATCCTT
1921GGAATTATGG ACAATATTAT CCTCCCCCTC CAACCTTGCC AACTTTCTTG TACAAAGTtg
1981gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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