Construct: ORF ccsbBroadEn_12142
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011517.1_s300c1, BRDN0000394029
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC40 (55036)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55036 | CCDC40 | coiled-coil domain containi... | NM_001330508.2 | 80.3% | 75.7% | (many diffs) |
| 2 | human | 55036 | CCDC40 | coiled-coil domain containi... | XM_011524965.3 | 63.5% | 61% | (many diffs) |
| 3 | human | 55036 | CCDC40 | coiled-coil domain containi... | XM_017024807.1 | 56.1% | 53.8% | (many diffs) |
| 4 | human | 55036 | CCDC40 | coiled-coil domain containi... | XR_001752550.2 | 48.3% | (many diffs) | |
| 5 | human | 55036 | CCDC40 | coiled-coil domain containi... | NM_001243342.1 | 44.5% | 42.7% | (many diffs) |
| 6 | human | 55036 | CCDC40 | coiled-coil domain containi... | NM_017950.4 | 40.2% | 38.5% | (many diffs) |
| 7 | human | 55036 | CCDC40 | coiled-coil domain containi... | XM_011524963.3 | 37.5% | 35.9% | (many diffs) |
| 8 | human | 55036 | CCDC40 | coiled-coil domain containi... | XM_024450821.1 | 37.5% | 35.9% | (many diffs) |
| 9 | human | 55036 | CCDC40 | coiled-coil domain containi... | XR_934495.2 | 31.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1500
- ORF length:
- 1434
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGAACCGGGC GGCGCGGCGG GCCGGTCCCA TCCGGAAGAT GGATCGGCTT 121 CTGAGGGAGA GAAGGAAGGG AATAATGAAA GCCACATGGT GTCACCACCA GAGAAGGATG 181 ATGGCCAGAA AGGTGAAGAA GCTGTCGGTA GCACAGAGCA TCCTGAGGAA GTCACAACCC 241 AAGCGGAAGC TGCAATTGAA GAGGGGGAGG TCGAGACAGA AGGGGAAGCA GCAGTGGAAG 301 GGGAAGAGGA GGCTGTGTCC TATGGAGATG CTGAAAGCGA AGAGGAATAT TACTATACAG 361 AAACTTCATC CCCGGAAGGG CAAATCAGTG CTGCAGATAC GACTTACCCG TATTTCAGTC 421 CTCCTCAGGA ACTGCCTGGA GAGGAGGCAT ACGATAGTGT TAGCGGGGAG GCTGGTCTCC 481 AAGGCTTCCA GCAAGAGGCC ACCGGTCCAC CAGAATCCAG AGAAAGGAGG GTCACCTCCC 541 CAGAGCCATC CCACGGAGTC TTAGGCCCGT CGGAGCAAAT GGGCCAGGTC ACCTCTGGGC 601 CAGCAGTGGG CAGATTGACA GGATCCACAG AGGAGCCCCA GGGGCAGGTG CTCCCAATGG 661 GCGTCCAGCA CCGCTTCCGG CTGAGCCACG GGAGCGACAT CGAGTCCTCA GACCTGGAGG 721 AGTTCGTCTC GCAGGAGCCA GTGATCCCCC CAGGGGTGCC CGATGCCCAC CCCAGGGAAG 781 GAGACCTGCC AGTGTTCCAG GACCAGATCC AGCAGCCCAG CACCGAGGAG GGGGCCATGG 841 CAGAGAGAGT GGAGTCCGAG GGGAGTGACG AGGAAGCAGA AGACGAAGGG TCCCAGCTGG 901 TGGTTTTGGA CCCAGACCAC CCCCTGATGG TAAGATTTCA GGCTGCCCTG AAGAACTACC 961 TGAACCGACA GATCGAAAAG TTGAAGCTGG ACCTCCAAGA GCTGGTTGTG GCTACCAAGC 1021 AGAGCCGAGC CCAGCGGCAG GAGCTGGGGG TGAATCTCTA TGAGGTGCAG CAGCACCTGG 1081 TACACCTGCA GAAGCTGCTG GAGAAGAGTC ACGACCGCCA CGCAATGGCC TCGAGCGAGC 1141 GCAGGCAGAA GGAGGAGGAG CTGCAGGCCG CCCGCGCTCT CTACACCAAG ACCTGCGCAG 1201 CCGCCAACGA GGAGCGCAAA AAGTTGGCGG CTCTGCAGAC TGAGATGGAG AACTTGGCCC 1261 TGCATCTCTT CTACATGCAG AACATCGACC AGGACATGCG TGACGACATC CGCGTGATGA 1321 CACAAGTGGT AAAGAAGGCC GAGACGGAGA GGATCCGGGC AGAAATCGAG AAGAAAAAGC 1381 AGGGCGTTGG AGACACAGGT GCTGCCTTCA TTCCTAAAAC CACCCAGGGT GACCAGGTCT 1441 CGGGACGCGG AAAGAAAAAG CCGGGCACTG TGGTGGCACG TGTCTCACCC GCTGAGCTTT 1501 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1561 acgaac