Construct: ORF ccsbBroadEn_12155
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006603.1_s300c1, BRDN0000386690
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM51 (55092)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55092 | TMEM51 | transmembrane protein 51 | NM_001319665.2 | 99.7% | 100% | 393A>T |
| 2 | human | 55092 | TMEM51 | transmembrane protein 51 | NM_001136216.2 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
| 3 | human | 55092 | TMEM51 | transmembrane protein 51 | NM_001136217.1 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
| 4 | human | 55092 | TMEM51 | transmembrane protein 51 | NM_001136218.2 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
| 5 | human | 55092 | TMEM51 | transmembrane protein 51 | NM_018022.3 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
| 6 | human | 55092 | TMEM51 | transmembrane protein 51 | XM_005245919.1 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
| 7 | human | 55092 | TMEM51 | transmembrane protein 51 | XM_011541676.1 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
| 8 | human | 55092 | TMEM51 | transmembrane protein 51 | XM_017001590.1 | 53.2% | 45% | 342_345delCAGC;397A>T;410_759del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 471
- ORF length:
- 405
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GGCCCAGTCC AAGGCCAATG GCTCGCACTA TGCGCTGACC GCCATCGGCC 121 TGGGGATGCT GGTCCTTGGG GTGATCATGG CCATGTGGAA CCTGGTACCC GGCTTCAGCG 181 CGGCCGAGAA GCCAACAGCT CAGGGCAGCA ACAAGACCGA GGTGGGTGGC GGCATCCTCA 241 AGAGCAAGAC CTTCTCTGTG GCCTACGTGC TGGTCGGGGC CGGGGTGATG CTGCTGCTGC 301 TTTCTATCTG CCTGAGTATC AGGGATAAGA GGAAGCAGCG GCAGGGCGAG GACCTGGCCC 361 ATGTCCAGCA CCCGACAGGC GCTGGGCCTC ACGCCCAGGA GGAAGACAGG AGGAAGAAGA 421 GGAGGATGAG GAGGCTGCCT CAAGGTACTA TGTTCCCTGC TACGAGGAAG TGCCCAACTT 481 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac