Construct: ORF ccsbBroadEn_12161
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012568.1_s300c1, BRDN0000386373
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CRTAC1 (55118)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55118 | CRTAC1 | cartilage acidic protein 1 | NM_018058.7 | 68.2% | 68.2% | 1_630del |
| 2 | human | 55118 | CRTAC1 | cartilage acidic protein 1 | NM_001206528.2 | 62.7% | 60.5% | (many diffs) |
| 3 | human | 55118 | CRTAC1 | cartilage acidic protein 1 | XM_017016366.1 | 62.5% | 59.8% | (many diffs) |
| 4 | human | 55118 | CRTAC1 | cartilage acidic protein 1 | XM_011539917.1 | 61.9% | 59.6% | (many diffs) |
| 5 | human | 55118 | CRTAC1 | cartilage acidic protein 1 | XM_005269938.4 | 61.5% | 59.4% | (many diffs) |
| 6 | human | 55118 | CRTAC1 | cartilage acidic protein 1 | XM_017016367.1 | 60.3% | 60.2% | (many diffs) |
| 7 | mouse | 72832 | Crtac1 | cartilage acidic protein 1 | NM_145123.4 | 55.5% | 57.6% | (many diffs) |
| 8 | mouse | 72832 | Crtac1 | cartilage acidic protein 1 | XM_006527372.3 | 54.3% | 54.1% | (many diffs) |
| 9 | mouse | 72832 | Crtac1 | cartilage acidic protein 1 | XM_006527373.3 | 53.6% | 56.5% | (many diffs) |
| 10 | mouse | 72832 | Crtac1 | cartilage acidic protein 1 | XM_006527370.2 | 50.6% | 52.5% | (many diffs) |
| 11 | mouse | 72832 | Crtac1 | cartilage acidic protein 1 | XM_006527369.2 | 49.8% | 49.6% | (many diffs) |
| 12 | mouse | 72832 | Crtac1 | cartilage acidic protein 1 | XM_006527371.2 | 48.9% | 51.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1419
- ORF length:
- 1353
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCCTGAGGCC AGTGACCTCT CCCGGGGCAT TCTGGCGCTC AGAGATGTGG 121 CTGCTGAGGC TGGGGTCAGC AAATATACAG GGGGCCGAGG CGTCAGCGTG GGCCCCATCC 181 TCAGCAGCAG TGCCTCGGAT ATCTTCTGCG ACAATGAGAA TGGGCCTAAC TTCCTTTTCC 241 ACAACCGGGG CGATGGCACC TTTGTGGACG CTGCGGCCAG TGCTGGTGTG GACGACCCCC 301 ACCAGCATGG GCGAGGTGTC GCCCTGGCTG ACTTCAACCG TGATGGCAAA GTGGACATCG 361 TCTATGGCAA CTGGAATGGC CCCCACCGCC TCTATCTGCA AATGAGCACC CATGGGAAGG 421 TCCGCTTCCG GGACATCGCC TCACCCAAGT TCTCCATGCC CTCCCCTGTC CGCACGGTCA 481 TCACCGCCGA CTTTGACAAT GACCAGGAGC TGGAGATCTT CTTCAACAAC ATTGCCTACC 541 GCAGCTCCTC AGCCAACCGC CTCTTCCGCG TCATCCGTAG AGAGCACGGA GACCCCCTCA 601 TCGAGGAGCT CAATCCCGGC GACGCCTTGG AGCCTGAGGG CCGGGGCACA GGGGGTGTGG 661 TGACCGACTT CGACGGAGAC GGGATGCTGG ACCTCATCTT GTCCCATGGA GAGTCCATGG 721 CTCAGCCGCT GTCCGTCTTC CGGGGCAATC AGGGCTTCAA CAACAACTGG CTGCGAGTGG 781 TGCCACGCAC CCGGTTTGGG GCCTTTGCCA GGGGAGCTAA GGTCGTGCTC TACACCAAGA 841 AGAGTGGGGC CCACCTGAGG ATCATCGACG GGGGCTCAGG CTACCTGTGT GAGATGGAGC 901 CCGTGGCACA CTTTGGCCTG GGGAAGGATG AAGCCAGCAG TGTGGAGGTG ACGTGGCCAG 961 ATGGCAAGAT GGTGAGCCGG AACGTGGCCA GCGGGGAGAT GAACTCAGTG CTGGAGATCC 1021 TCTACCCCCG GGATGAGGAC ACACTTCAGG ACCCAGCCCC ACTGGAGTGT GGCCAAGGAT 1081 TCTCCCAGCA GGAAAATGGC CATTGCATGG ACACCAATGA ATGCATCCAG TTCCCATTCG 1141 TGTGCCCTCG AGACAAGCCC GTATGTGTCA ACACCTATGG AAGCTACAGG TGCCGGACCA 1201 ACAAGAAGTG CAGTCGGGGC TACGAGCCCA ACGAGGATGG CACAGCCTGC GTGGGGACTC 1261 TCGGCCAGTC ACCGGGCCCC CGCCCCACCA CCCCCACCGC TGCTGCTGCC ACTGCCGCTG 1321 CTGCTGCCGC TGCTGGAGCT GCCACTGCTG CACCGGTCCT CGTAGATGGA GATCTCAATC 1381 TGGGGTCGGT GGTTAAGGAG AGCTGCGAGC CCAGCTGCTG CCCAACTTTC TTGTACAAAG 1441 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac