Construct: ORF ccsbBroadEn_12161

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012568.1_s300c1, BRDN0000386373
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CRTAC1 (55118)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55118 CRTAC1 cartilage acidic protein 1 NM_018058.7 68.2% 68.2% 1_630del
2 human 55118 CRTAC1 cartilage acidic protein 1 NM_001206528.2 62.7% 60.5% (many diffs)
3 human 55118 CRTAC1 cartilage acidic protein 1 XM_017016366.1 62.5% 59.8% (many diffs)
4 human 55118 CRTAC1 cartilage acidic protein 1 XM_011539917.1 61.9% 59.6% (many diffs)
5 human 55118 CRTAC1 cartilage acidic protein 1 XM_005269938.4 61.5% 59.4% (many diffs)
6 human 55118 CRTAC1 cartilage acidic protein 1 XM_017016367.1 60.3% 60.2% (many diffs)
7 mouse 72832 Crtac1 cartilage acidic protein 1 NM_145123.4 55.5% 57.6% (many diffs)
8 mouse 72832 Crtac1 cartilage acidic protein 1 XM_006527372.3 54.3% 54.1% (many diffs)
9 mouse 72832 Crtac1 cartilage acidic protein 1 XM_006527373.3 53.6% 56.5% (many diffs)
10 mouse 72832 Crtac1 cartilage acidic protein 1 XM_006527370.2 50.6% 52.5% (many diffs)
11 mouse 72832 Crtac1 cartilage acidic protein 1 XM_006527369.2 49.8% 49.6% (many diffs)
12 mouse 72832 Crtac1 cartilage acidic protein 1 XM_006527371.2 48.9% 51.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1419
ORF length:
1353
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CCCTGAGGCC AGTGACCTCT CCCGGGGCAT TCTGGCGCTC AGAGATGTGG
121CTGCTGAGGC TGGGGTCAGC AAATATACAG GGGGCCGAGG CGTCAGCGTG GGCCCCATCC
181TCAGCAGCAG TGCCTCGGAT ATCTTCTGCG ACAATGAGAA TGGGCCTAAC TTCCTTTTCC
241ACAACCGGGG CGATGGCACC TTTGTGGACG CTGCGGCCAG TGCTGGTGTG GACGACCCCC
301ACCAGCATGG GCGAGGTGTC GCCCTGGCTG ACTTCAACCG TGATGGCAAA GTGGACATCG
361TCTATGGCAA CTGGAATGGC CCCCACCGCC TCTATCTGCA AATGAGCACC CATGGGAAGG
421TCCGCTTCCG GGACATCGCC TCACCCAAGT TCTCCATGCC CTCCCCTGTC CGCACGGTCA
481TCACCGCCGA CTTTGACAAT GACCAGGAGC TGGAGATCTT CTTCAACAAC ATTGCCTACC
541GCAGCTCCTC AGCCAACCGC CTCTTCCGCG TCATCCGTAG AGAGCACGGA GACCCCCTCA
601TCGAGGAGCT CAATCCCGGC GACGCCTTGG AGCCTGAGGG CCGGGGCACA GGGGGTGTGG
661TGACCGACTT CGACGGAGAC GGGATGCTGG ACCTCATCTT GTCCCATGGA GAGTCCATGG
721CTCAGCCGCT GTCCGTCTTC CGGGGCAATC AGGGCTTCAA CAACAACTGG CTGCGAGTGG
781TGCCACGCAC CCGGTTTGGG GCCTTTGCCA GGGGAGCTAA GGTCGTGCTC TACACCAAGA
841AGAGTGGGGC CCACCTGAGG ATCATCGACG GGGGCTCAGG CTACCTGTGT GAGATGGAGC
901CCGTGGCACA CTTTGGCCTG GGGAAGGATG AAGCCAGCAG TGTGGAGGTG ACGTGGCCAG
961ATGGCAAGAT GGTGAGCCGG AACGTGGCCA GCGGGGAGAT GAACTCAGTG CTGGAGATCC
1021TCTACCCCCG GGATGAGGAC ACACTTCAGG ACCCAGCCCC ACTGGAGTGT GGCCAAGGAT
1081TCTCCCAGCA GGAAAATGGC CATTGCATGG ACACCAATGA ATGCATCCAG TTCCCATTCG
1141TGTGCCCTCG AGACAAGCCC GTATGTGTCA ACACCTATGG AAGCTACAGG TGCCGGACCA
1201ACAAGAAGTG CAGTCGGGGC TACGAGCCCA ACGAGGATGG CACAGCCTGC GTGGGGACTC
1261TCGGCCAGTC ACCGGGCCCC CGCCCCACCA CCCCCACCGC TGCTGCTGCC ACTGCCGCTG
1321CTGCTGCCGC TGCTGGAGCT GCCACTGCTG CACCGGTCCT CGTAGATGGA GATCTCAATC
1381TGGGGTCGGT GGTTAAGGAG AGCTGCGAGC CCAGCTGCTG CCCAACTTTC TTGTACAAAG
1441Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)