Construct: ORF ccsbBroadEn_12275

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016568.1_s300c1, BRDN0000395573
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMBRD1 (55788)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55788 LMBRD1 LMBR1 domain containing 1 NM_001363722.2 40.1% 34.1% (many diffs)
2 human 55788 LMBRD1 LMBR1 domain containing 1 NM_001367271.1 40.1% 34.1% (many diffs)
3 human 55788 LMBRD1 LMBR1 domain containing 1 NM_001367272.1 40.1% 34.1% (many diffs)
4 human 55788 LMBRD1 LMBR1 domain containing 1 NM_018368.4 34.7% 29.5% (many diffs)
5 mouse 68421 Lmbrd1 LMBR1 domain containing 1 NM_001310483.1 34.8% 32.6% (many diffs)
6 mouse 68421 Lmbrd1 LMBR1 domain containing 1 XM_017322292.1 30.3% 28.5% (many diffs)
7 mouse 68421 Lmbrd1 LMBR1 domain containing 1 NM_026719.2 30.2% 28.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
630
ORF length:
564
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GGCAGCTATA ACTTACACAG CCTATGGCAT GTCTGCGTTA CCTTTAAATC
121TGATAAAAGG CACTAGAAGC GCTGCTTATG AACGTTTGGA AAACACTGAA GACATTGAAG
181AAGTAGAACA ACACATTCAA ACGATTAAAT CAAAAAGCAA AGATGGTCGA CCTTTGCCAG
241CAAGGGATAA ACGCGCCTTA AAACAATTTG AAGAAAGGTT ACGAACACTT AAGAAGAGAG
301AGAGGCATTT AGAATTCATT GAAAACAGCT GGTGGACAAA ATTTTGTGGC GCTCTGCGTC
361CCCTGAAGAT CGTCTGGGGA ATATTTTTCA TCTTAGTTGC ATTGCTGTTT GTAATTTCTC
421TCTTCTTGTC AAATTTAGAT AAAGCTCTTC ATTCAGCTGG AATAGATTCT GGTTTCATAA
481TTTTTGGAGC TAACCTGAGT AATCCACTGA ATATGCTTTT GCCTTTACTA CAAACAGAAT
541TCGAAATATT GGCATATGGT TCTTTTGGAT TAGATTATAT AAAATCAGAA GAGGTAGAAC
601CAGGCCCTAA GCACTCCTTT TTCTCTGCAT GCCCAACTTT CTTGTACAAA GTtggcatta
661taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)