Construct: ORF ccsbBroadEn_12315
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005094.1_s300c1, BRDN0000394772
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARNTL2 (56938)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248003.2 | 100% | 100% | |
| 2 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248004.2 | 98.1% | 98.1% | 29_30ins33 |
| 3 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520769.2 | 97.7% | 97.7% | 216_257del |
| 4 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_024449072.1 | 97% | 96.1% | (many diffs) |
| 5 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019666.1 | 94.8% | 94.8% | 451_452ins93 |
| 6 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_006719112.3 | 94.6% | 94.6% | 216_317del |
| 7 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248002.2 | 92.8% | 92.8% | 29_30ins33;183_284del |
| 8 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520766.2 | 92.5% | 92.5% | 216_359del |
| 9 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_020183.5 | 90.8% | 90.8% | 29_30ins33;183_326del |
| 10 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248005.2 | 90.1% | 86.4% | 1554_1555ins109;1620_1621ins68 |
| 11 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_024449071.1 | 89.9% | 89% | (many diffs) |
| 12 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520770.2 | 88.9% | 88.3% | (many diffs) |
| 13 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520771.2 | 88.9% | 88.3% | (many diffs) |
| 14 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019667.1 | 88.9% | 88.3% | (many diffs) |
| 15 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019668.1 | 88.9% | 88.3% | (many diffs) |
| 16 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019669.1 | 88.5% | 87.9% | (many diffs) |
| 17 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520768.2 | 87.7% | 87.7% | 216_359del;595_596ins93 |
| 18 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_006719114.3 | 85.8% | 85.8% | 0_1ins255 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1866
- ORF length:
- 1797
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGCGGAA GAGGAGGCTG CGGCGGGAGG TGAGGTTGCC GGTGGCGAGG 121 CGACGGCCCC AGGTAAAGTG TTGAGAGAGG AGAACCAGTG CATTGCTCCT GTGGTTTCCA 181 GCCGCGTGAG TCCAGGGACA AGACCAACAG CTATGGGGTC TTTCAGCTCA CACATGACAG 241 AGTTTCCACG AAAACGCAAA GGAAGTGATT CAGACCCATC CCAAGAAGCT CATAGCCAAA 301 CTGAAAAGCG GAGGAGAGAT AAAATGAATA ACCTGATTGA AGAACTGTCT GCAATGATCC 361 CTCAGTGCAA CCCCATGGCG CGTAAACTGG ACAAACTTAC AGTTTTAAGA ATGGCTGTTC 421 AACACTTGAG ATCTTTAAAA GGCTTGACAA ATTCTTATGT GGGAAGTAAT TATAGACCAT 481 CATTTCTTCA GGATAATGAG CTCAGACATT TAATCCTTAA GACTGCAGAA GGCTTCTTAT 541 TTGTGGTTGG ATGTGAAAGA GGAAAAATTC TCTTCGTTTC TAAGTCAGTC TCCAAAATAC 601 TTAATTATGA TCAGGCTAGT TTGACTGGAC AAAGCTTATT TGACTTCTTA CATCCAAAAG 661 ATGTTGCCAA AGTAAAGGAA CAACTTTCTT CTTTTGATAT TTCACCAAGA GAAAAGCTAA 721 TAGATGCCAA AACTGGTTTG CAAGTTCACA GTAATCTCCA CGCTGGAAGG ACACGTGTGT 781 ATTCTGGCTC AAGACGATCT TTTTTCTGTC GGATAAAGAG TTGTAAAATC TCTGTCAAAG 841 AAGAGCATGG ATGCTTACCC AACTCAAAGA AGAAAGAGCA CAGAAAATTC TATACTATCC 901 ATTGCACTGG TTACTTGAGA AGCTGGCCTC CAAATATTGT TGGAATGGAA GAAGAAAGGA 961 ACAGTAAGAA AGACAACAGT AATTTTACCT GCCTTGTGGC CATTGGAAGA TTACAGCCAT 1021 ATATTGTTCC ACAGAACAGT GGAGAGATTA ATGTGAAACC AACTGAATTT ATAACCCGGT 1081 TTGCAGTGAA TGGAAAATTT GTCTATGTAG ATCAAAGGGC AACAGCGATT TTAGGATATC 1141 TGCCTCAGGA ACTTTTGGGA ACTTCTTGTT ATGAATATTT TCATCAAGAT GACCACAATA 1201 ATTTGACTGA CAAGCACAAA GCAGTTCTAC AGAGTAAGGA GAAAATACTT ACAGATTCCT 1261 ACAAATTCAG AGCAAAAGAT GGCTCTTTTG TAACTTTAAA AAGCCAATGG TTTAGTTTCA 1321 CAAATCCTTG GACAAAAGAA CTGGAATATA TTGTATCTGT CAACACTTTA GTTTTGGGAC 1381 ATAGTGAGCC TGGAGAAGCA TCATTTTTAC CTTGTAGCTC TCAATCATCA GAAGAATCCT 1441 CTAGACAGTC CTGTATGAGT GTACCTGGAA TGTCTACTGG AACAGTACTT GGTGCTGGTA 1501 GTATTGGAAC AGATATTGCA AATGAAATTC TGGATTTACA GAGGTTACAG TCTTCTTCAT 1561 ACCTTGATGA TTCGAGTCCA ACAGGTTTAA TGAAAGATAC TCATACTGTA AACTGCAGGA 1621 GTATGTCAAA TAAGGAGTTG TTTCCACCAA GTCCTTCTGA AATGGGGGAG CTAGAGGCTA 1681 CCAGGCAAAA CCAGAGTACT GTTGCTGTCC ACAGCCATGA GCCACTCCTC AGTGATGGTG 1741 CACAGTTGGA TTTCGATGCC CTATGTGACA ATGATGACAC AGCCATGGCT GCATTTATGA 1801 ATTACTTAGA AGCAGAGGGG GGCCTGGGAG ACCCTGGGGA CTTCAGTGAC ATCCAGTGGA 1861 CCCTCTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1921 gttgcaacga ac