Construct: ORF ccsbBroadEn_12316

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008741.1_s300c1, BRDN0000457012
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARNTL2 (56938)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248004.2 100% 100%
2 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_024449072.1 98.8% 98.3% (many diffs)
3 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248003.2 98.1% 98.1% 30_62del
4 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520769.2 95.9% 95.9% 30_62del;216_257del
5 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248002.2 94.5% 94.5% 183_284del
6 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019666.1 92.9% 92.9% 30_62del;451_452ins93
7 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_006719112.3 92.8% 92.8% 30_62del;216_317del
8 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_020183.5 92.4% 92.4% 183_326del
9 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_024449071.1 91.3% 90.9% (many diffs)
10 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520766.2 90.8% 90.8% 30_62del;216_359del
11 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520770.2 90.5% 89.9% (many diffs)
12 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520771.2 90.5% 89.9% (many diffs)
13 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019667.1 90.5% 89.9% (many diffs)
14 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019668.1 90.5% 89.9% (many diffs)
15 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019669.1 90.2% 89.6% (many diffs)
16 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248005.2 88.3% 84.6% 30_62del;1554_1555ins109;1620_1621ins68
17 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_006719114.3 87.4% 87.4% 0_1ins222
18 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520768.2 86% 86% 30_62del;216_359del;595_596ins93
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1833
ORF length:
1764
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGCGGAA GAGGAGGCTG CGGCGGGAGG TAAAGTGTTG AGAGAGGAGA
121ACCAGTGCAT TGCTCCTGTG GTTTCCAGCC GCGTGAGTCC AGGGACAAGA CCAACAGCTA
181TGGGGTCTTT CAGCTCACAC ATGACAGAGT TTCCACGAAA ACGCAAAGGA AGTGATTCAG
241ACCCATCCCA AGAAGCTCAT AGCCAAACTG AAAAGCGGAG GAGAGATAAA ATGAATAACC
301TGATTGAAGA ACTGTCTGCA ATGATCCCTC AGTGCAACCC CATGGCGCGT AAACTGGACA
361AACTTACAGT TTTAAGAATG GCTGTTCAAC ACTTGAGATC TTTAAAAGGC TTGACAAATT
421CTTATGTGGG AAGTAATTAT AGACCATCAT TTCTTCAGGA TAATGAGCTC AGACATTTAA
481TCCTTAAGAC TGCAGAAGGC TTCTTATTTG TGGTTGGATG TGAAAGAGGA AAAATTCTCT
541TCGTTTCTAA GTCAGTCTCC AAAATACTTA ATTATGATCA GGCTAGTTTG ACTGGACAAA
601GCTTATTTGA CTTCTTACAT CCAAAAGATG TTGCCAAAGT AAAGGAACAA CTTTCTTCTT
661TTGATATTTC ACCAAGAGAA AAGCTAATAG ATGCCAAAAC TGGTTTGCAA GTTCACAGTA
721ATCTCCACGC TGGAAGGACA CGTGTGTATT CTGGCTCAAG ACGATCTTTT TTCTGTCGGA
781TAAAGAGTTG TAAAATCTCT GTCAAAGAAG AGCATGGATG CTTACCCAAC TCAAAGAAGA
841AAGAGCACAG AAAATTCTAT ACTATCCATT GCACTGGTTA CTTGAGAAGC TGGCCTCCAA
901ATATTGTTGG AATGGAAGAA GAAAGGAACA GTAAGAAAGA CAACAGTAAT TTTACCTGCC
961TTGTGGCCAT TGGAAGATTA CAGCCATATA TTGTTCCACA GAACAGTGGA GAGATTAATG
1021TGAAACCAAC TGAATTTATA ACCCGGTTTG CAGTGAATGG AAAATTTGTC TATGTAGATC
1081AAAGGGCAAC AGCGATTTTA GGATATCTGC CTCAGGAACT TTTGGGAACT TCTTGTTATG
1141AATATTTTCA TCAAGATGAC CACAATAATT TGACTGACAA GCACAAAGCA GTTCTACAGA
1201GTAAGGAGAA AATACTTACA GATTCCTACA AATTCAGAGC AAAAGATGGC TCTTTTGTAA
1261CTTTAAAAAG CCAATGGTTT AGTTTCACAA ATCCTTGGAC AAAAGAACTG GAATATATTG
1321TATCTGTCAA CACTTTAGTT TTGGGACATA GTGAGCCTGG AGAAGCATCA TTTTTACCTT
1381GTAGCTCTCA ATCATCAGAA GAATCCTCTA GACAGTCCTG TATGAGTGTA CCTGGAATGT
1441CTACTGGAAC AGTACTTGGT GCTGGTAGTA TTGGAACAGA TATTGCAAAT GAAATTCTGG
1501ATTTACAGAG GTTACAGTCT TCTTCATACC TTGATGATTC GAGTCCAACA GGTTTAATGA
1561AAGATACTCA TACTGTAAAC TGCAGGAGTA TGTCAAATAA GGAGTTGTTT CCACCAAGTC
1621CTTCTGAAAT GGGGGAGCTA GAGGCTACCA GGCAAAACCA GAGTACTGTT GCTGTCCACA
1681GCCATGAGCC ACTCCTCAGT GATGGTGCAC AGTTGGATTT CGATGCCCTA TGTGACAATG
1741ATGACACAGC CATGGCTGCA TTTATGAATT ACTTAGAAGC AGAGGGGGGC CTGGGAGACC
1801CTGGGGACTT CAGTGACATC CAGTGGACCC TCTTGCCAAC TTTCTTGTAC AAAGTTGGca
1861ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)