Construct: ORF ccsbBroadEn_12316
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008741.1_s300c1, BRDN0000457012
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARNTL2 (56938)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248004.2 | 100% | 100% | |
| 2 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_024449072.1 | 98.8% | 98.3% | (many diffs) |
| 3 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248003.2 | 98.1% | 98.1% | 30_62del |
| 4 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520769.2 | 95.9% | 95.9% | 30_62del;216_257del |
| 5 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248002.2 | 94.5% | 94.5% | 183_284del |
| 6 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019666.1 | 92.9% | 92.9% | 30_62del;451_452ins93 |
| 7 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_006719112.3 | 92.8% | 92.8% | 30_62del;216_317del |
| 8 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_020183.5 | 92.4% | 92.4% | 183_326del |
| 9 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_024449071.1 | 91.3% | 90.9% | (many diffs) |
| 10 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520766.2 | 90.8% | 90.8% | 30_62del;216_359del |
| 11 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520770.2 | 90.5% | 89.9% | (many diffs) |
| 12 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520771.2 | 90.5% | 89.9% | (many diffs) |
| 13 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019667.1 | 90.5% | 89.9% | (many diffs) |
| 14 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019668.1 | 90.5% | 89.9% | (many diffs) |
| 15 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_017019669.1 | 90.2% | 89.6% | (many diffs) |
| 16 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | NM_001248005.2 | 88.3% | 84.6% | 30_62del;1554_1555ins109;1620_1621ins68 |
| 17 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_006719114.3 | 87.4% | 87.4% | 0_1ins222 |
| 18 | human | 56938 | ARNTL2 | aryl hydrocarbon receptor n... | XM_011520768.2 | 86% | 86% | 30_62del;216_359del;595_596ins93 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1833
- ORF length:
- 1764
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGCGGAA GAGGAGGCTG CGGCGGGAGG TAAAGTGTTG AGAGAGGAGA 121 ACCAGTGCAT TGCTCCTGTG GTTTCCAGCC GCGTGAGTCC AGGGACAAGA CCAACAGCTA 181 TGGGGTCTTT CAGCTCACAC ATGACAGAGT TTCCACGAAA ACGCAAAGGA AGTGATTCAG 241 ACCCATCCCA AGAAGCTCAT AGCCAAACTG AAAAGCGGAG GAGAGATAAA ATGAATAACC 301 TGATTGAAGA ACTGTCTGCA ATGATCCCTC AGTGCAACCC CATGGCGCGT AAACTGGACA 361 AACTTACAGT TTTAAGAATG GCTGTTCAAC ACTTGAGATC TTTAAAAGGC TTGACAAATT 421 CTTATGTGGG AAGTAATTAT AGACCATCAT TTCTTCAGGA TAATGAGCTC AGACATTTAA 481 TCCTTAAGAC TGCAGAAGGC TTCTTATTTG TGGTTGGATG TGAAAGAGGA AAAATTCTCT 541 TCGTTTCTAA GTCAGTCTCC AAAATACTTA ATTATGATCA GGCTAGTTTG ACTGGACAAA 601 GCTTATTTGA CTTCTTACAT CCAAAAGATG TTGCCAAAGT AAAGGAACAA CTTTCTTCTT 661 TTGATATTTC ACCAAGAGAA AAGCTAATAG ATGCCAAAAC TGGTTTGCAA GTTCACAGTA 721 ATCTCCACGC TGGAAGGACA CGTGTGTATT CTGGCTCAAG ACGATCTTTT TTCTGTCGGA 781 TAAAGAGTTG TAAAATCTCT GTCAAAGAAG AGCATGGATG CTTACCCAAC TCAAAGAAGA 841 AAGAGCACAG AAAATTCTAT ACTATCCATT GCACTGGTTA CTTGAGAAGC TGGCCTCCAA 901 ATATTGTTGG AATGGAAGAA GAAAGGAACA GTAAGAAAGA CAACAGTAAT TTTACCTGCC 961 TTGTGGCCAT TGGAAGATTA CAGCCATATA TTGTTCCACA GAACAGTGGA GAGATTAATG 1021 TGAAACCAAC TGAATTTATA ACCCGGTTTG CAGTGAATGG AAAATTTGTC TATGTAGATC 1081 AAAGGGCAAC AGCGATTTTA GGATATCTGC CTCAGGAACT TTTGGGAACT TCTTGTTATG 1141 AATATTTTCA TCAAGATGAC CACAATAATT TGACTGACAA GCACAAAGCA GTTCTACAGA 1201 GTAAGGAGAA AATACTTACA GATTCCTACA AATTCAGAGC AAAAGATGGC TCTTTTGTAA 1261 CTTTAAAAAG CCAATGGTTT AGTTTCACAA ATCCTTGGAC AAAAGAACTG GAATATATTG 1321 TATCTGTCAA CACTTTAGTT TTGGGACATA GTGAGCCTGG AGAAGCATCA TTTTTACCTT 1381 GTAGCTCTCA ATCATCAGAA GAATCCTCTA GACAGTCCTG TATGAGTGTA CCTGGAATGT 1441 CTACTGGAAC AGTACTTGGT GCTGGTAGTA TTGGAACAGA TATTGCAAAT GAAATTCTGG 1501 ATTTACAGAG GTTACAGTCT TCTTCATACC TTGATGATTC GAGTCCAACA GGTTTAATGA 1561 AAGATACTCA TACTGTAAAC TGCAGGAGTA TGTCAAATAA GGAGTTGTTT CCACCAAGTC 1621 CTTCTGAAAT GGGGGAGCTA GAGGCTACCA GGCAAAACCA GAGTACTGTT GCTGTCCACA 1681 GCCATGAGCC ACTCCTCAGT GATGGTGCAC AGTTGGATTT CGATGCCCTA TGTGACAATG 1741 ATGACACAGC CATGGCTGCA TTTATGAATT ACTTAGAAGC AGAGGGGGGC CTGGGAGACC 1801 CTGGGGACTT CAGTGACATC CAGTGGACCC TCTTGCCAAC TTTCTTGTAC AAAGTTGGca 1861 ttataagaaa gcattgctta tcaatttgtt gcaacgaac