Construct: ORF ccsbBroadEn_12339
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010735.1_s300c1, BRDN0000384909
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SMAGP (57228)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57228 | SMAGP | small cell adhesion glycopr... | NM_001031628.2 | 25% | 3% | 1_205del;291_292ins52 |
| 2 | human | 57228 | SMAGP | small cell adhesion glycopr... | NM_001033873.1 | 25% | 3% | 1_205del;291_292ins52 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 204
- ORF length:
- 138
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCTACAGAAG GTGAGCCCAG TGCCATCGTC CAGATGGAGA GTGACTTGGC 121 CAAGGGCAGC GAGAAAGAGG AATATTTCAT CTAATGACTC CCAGGCCCCA AGGAGCTTAT 181 TCCTGGCTCC ATCGCTAACA CGTTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 241 agcattgctt atcaatttgt tgcaacgaac