Construct: ORF ccsbBroadEn_12369
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016800.1_s300c1, BRDN0000457304
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CRAMP1 (57585)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57585 | CRAMP1 | cramped chromatin regulator... | NM_020825.4 | 83.8% | 83.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3264
- ORF length:
- 3195
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGAAGAAC AAGGAGCAAG TCCGCCACTT CTACTACCGC ACCTGGCACA 121 AGATCACCAA GTACATCGAC TTTGATCATG TGTTCTCTCG AGGCCTGAAG AAGTCATCCC 181 AGGAACTGTA TGACCTGATC TGCTATGGCG AGCTGCGCAA GAAGATTGGG GGCTGTATGG 241 ATGACAAGAA TGCAACAAAG CTGAATGAAC TCATTCAGGT TGGGGCCACC ACTGTACGTT 301 ACAAAGGGCG GAACCTGCGG ATCAAAGCGC CCATGTGCCG GGCCCTGAAG AAACTGTGCG 361 ATCCAGATGG CTTGAGTGAT GAAGAGGACC AGAAGCCAGT GCGCCTGCCT CTGAAAGTCC 421 CTATAGAGCT ACAGCCGCGG AACAACCACG CCTGGGCCCG TGTGCAGAGC CTTGCCCAGA 481 ACCCACGCCT CAGGATGATC GTGGAGCTAC ATCGAAAGGT CTCCAGCCTC ATCGAATTCT 541 TGAAGCAGAA GTGGGCGCTC CATGAGGTGC GAGTTCGGAA GACACTCGAG GAGCGGCAGC 601 TGCAGGACTC ATGCTCCGCA CCGATGCAGG AGAAGGTGAC ACTGCACTTG TTCCCAGGCG 661 AGAACTGTAC ACTGACACCG CTGCCGGGCG TGGCTCGCGT GGTGCACTCC AAGGCCTTCT 721 GCACAGTGCA CTGGCAGGAG GGCGGCCGGT GCAAGCAGAG TGCCAAGGAC GCCCACGTGC 781 TGCCCCCAGC CCAGATCCTG GGCATCCAGA GTGGGCAGGG CACGGCCCGG GGCCAGGTGA 841 AATGCCCGCG GAGCGGAGCT GAGGGCAAGG GTGTGGGGCG GCCCCCTCCT GCGGCTGACG 901 CCTTGCAGAG CTCCGGAGAG AGTTCCCCCG AAAGCGCCCC CGGGGAGGGG GCTGCCCTAA 961 GCTCGAGCAG CCCGGACGCT CCTGACAGGC CTCCTCCCAG GCACCAGGAC ACTGGGCCAT 1021 GTCTTGAGAA GACCCCTGCA GAAGGCAGGG ACAGTCCCAC CCGGGAGCCA GGGGCCTTGC 1081 CGTGTGCCTG TGGCCAGCTC CCAGACCTGG AGGACGAGCT CTCGCTTCTA GACCCCTTGC 1141 CCCGCTACCT AAAGTCCTGT CAGGACCTCA TTGTCCCCGA GCAGTGCCGC TGTGCGGACA 1201 CACGGCCTGG GAGCGAGCAG CCCCCTCTGG GCGGGGCGGC CTCCCCAGAG GTGCTGGCTC 1261 CTGTCAGCAA GGAGGCTGCT GACCTTGCTC CCACTGGCCC ATCCCCGAGG CCCGGCCCCG 1321 GGCTCCTGCT GGATGTTTGC ACTAAAGACT TGGCAGATGC ACCTGCGGAG GAGCTCCAGG 1381 AGAAGGGGAG CCCCGCGGGG CCTCCGCCGT CTCAGGGACA GCCTGCCGCC AGGCCCCCGA 1441 AGGAGGTCCC CGCCAGCCGG CTGGCTCAGC AGCTCCGTGA GGAGGGCTGG AACCTGCAGA 1501 CCTCCGAAAG CCTCACGCTG GCCGAAGTCT ACCTCATGAT GGGCAAGCCC AGCAAGCTGC 1561 AGCTGGAGTA CGACTGGCTG GGGCCCGGCC GCCAGGACCC CCGCCCCGGC TCCCTACCCA 1621 CCGCCCTCCA CAAGCAGCGC CTCCTCAGCT GCCTCCTGAA GCTCATTTCC ACCGAGGTCA 1681 ACCCCAAGCT GGCTCTGGAA GCAAACACCA TCTCTACAGC CTCAGTAAGG CCCGCCCAGG 1741 AGGAGCAGTC GATGACGCCC CCAGGGAAGG TGGTGACCGT CAGCTCTCGC AGCCCCCGCT 1801 GCCCTCGGAA CCAGGCCTCC CTCCGCAGCA GCAAGACCTT CCCGCCCAGC TCTGCACCCT 1861 GCTCCTCAGG TTTGAGAAAC CCTCCAAGAC CCCTCTTGGT GCCTGGTCCC TCCAGCACAG 1921 GAAGCAATGA CTCAGATGGA GGCCTTTTTG CTGTCCCGAC AACCTTGCCA CCCAACAGCC 1981 GACACGGGAA GCTCTTCTCT CCCAGTAAAG AAGCAGAGCT GACTTTCCGC CAGCATCTGA 2041 ACTCCATCAG TATGCAGTCG GATTTCTTCC TGCCAAAGCC CCGGAAGCTG CGGAACCGGC 2101 ACCTGCGGAA GCCACTGGTG GTCCAGAGAA CACTGCTCCC TAGACCATCG GAAAACCAGT 2161 CCCACAACGT TTGTTCCTTC TCCATCCTGT CTAACTCTTC CGTAACTGGG AGAGGTTCGT 2221 TCCGGCCCAT CCAGTCTTCT CTGACCAAAG CAGCTCTGTC TCGGCCGATC GTGCCCAAGG 2281 TCCTTCCACC CCAGGCCACG AGTCACCTGG CCAGTGCTAT CGACTTAGCA GCTACAAGTG 2341 CCGGCATCCT TTCCGGGAAC CCCCTCCCTG CCTTGGACAC CGAGGGCTTG TCTGGCATCT 2401 CTCCACTGTC TTCAGACGAG GTGACGGGTG CCATCTCGGG GCAGGACTCT ACTGGAACTC 2461 ACCAGGATGG AGACACCCTC CCCACCGTGG GGGGCTCCGA CCCATTTGTC AGCATCCCTT 2521 CGAGGCCTGA GCAGGAGCCA GTGGCAGACA GTTTCCAGGG CTCATCTGTT CTCTCCTTAT 2581 CTGAGCTGCC CAAGGCCCCT CTCCAGAATG GCCTCTCCAT ACCGCTGTCC TCGTCAGAGA 2641 GCTCCAGCAC CCGGCTGTCT CCACCAGACG TCTCTGCTCT GCTCGACATC TCCCTGCCCG 2701 GCCCACCTGA GGATGCGCTG TCACAGGGCG AGCCTGCCAC ACACATTAGC GACTCCATCA 2761 TTGAGATCGC CATCAGCTCC GGTCAGTACG GTGAAGGAGT CCCTCTTTCT CCAGCAAAAC 2821 TGAATGGCAG TGACAGTTCC AAGAGCCTTC CCTCCCCGTC CAGCAGCCCC CAGCCACACT 2881 GGATCGCCTC TCCCACCCAC GACCCCCAGT GGTACCCCAG TGACTCCACC GACTCCTCGC 2941 TCAGCAGCCT GTTTGCAAGC TTCATCTCCC CAGAGAAGAG CCGGAAGATG TTGCCGACTC 3001 CCATTGGGAC CAACAGTGGC ACTTCCTTGC TTGGCCCCAG CTTGTTGGAT GGAAACTCGC 3061 GGGACTCATT TGTGTCCAGG TCCCTGGCTG ACGTTGCAGA GGTTGTGGAT TCCCAGCTGG 3121 TGTGCATGAT GAACGAAAAC AGCATTGATT ACATTTCTCG GTTCAATGAC CTGGCCCAAG 3181 AGCTGTCCAT CGCTGAGCCT GGCCGCCGAG AAGCTCTGTT TGATGGTGGT GGAGGCGGCC 3241 CCGCTGTCAG TGACCTGTCC CAGTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 3301 agcattgctt atcaatttgt tgcaacgaac