Construct: ORF ccsbBroadEn_12398
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011587.1_s300c1, BRDN0000386581
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC7A14 (57709)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57709 | SLC7A14 | solute carrier family 7 mem... | NM_020949.3 | 95.5% | 95.5% | 1_102del;594C>T |
| 2 | mouse | 241919 | Slc7a14 | solute carrier family 7 (ca... | NM_172861.3 | 86.9% | 92.6% | (many diffs) |
| 3 | mouse | 241919 | Slc7a14 | solute carrier family 7 (ca... | XM_006535472.4 | 86.9% | 92.6% | (many diffs) |
| 4 | mouse | 241919 | Slc7a14 | solute carrier family 7 (ca... | XM_030252613.1 | 86.9% | 92.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2277
- ORF length:
- 2211
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT AGAGGGAACT GGGACCACCA CGGCACATGG AACTAAGCTA GCCCAGGTAC 121 TCACCACAGT GGACCTCATC TCTCTTGGCG TTGGCAGCTG TGTGGGCACT GGCATGTATG 181 TGGTCTCTGG CCTGGTGGCC AAGGAAATGG CAGGACCTGG TGTCATTGTG TCCTTCATCA 241 TTGCAGCCGT CGCATCCATA TTATCAGGCG TCTGCTATGC AGAGTTTGGA GTTCGAGTCC 301 CCAAGACCAC AGGATCTGCC TACACCTACA GCTATGTCAC TGTTGGGGAA TTTGTGGCAT 361 TTTTCATTGG CTGGAACCTG ATCCTGGAGT ACCTGATTGG CACTGCGGCC GGAGCCAGTG 421 CTCTGAGCAG CATGTTTGAC TCACTAGCCA ACCACACCAT CAGCCGCTGG ATGGCGGACA 481 GCGTGGGAAC CCTCAATGGC CTGGGGAAAG GTGAAGAATC ATACCCAGAC CTTCTGGCTC 541 TGTTGATCGC GGTCATTGTG ACCATCATTG TTGCTCTGGG GGTGAAGAAT TCCATAGGCT 601 TCAACAATGT TCTCAATGTG CTGAACCTGG CAGTATGGGT GTTCATCATG ATCGCAGGCC 661 TCTTCTTCAT CAATGGGAAA TACTGGGCGG AGGGCCAGTT CTTGCCCCAC GGCTGGTCAG 721 GGGTGCTGCA AGGAGCAGCA ACATGCTTCT ACGCTTTCAT TGGCTTTGAC ATCATCGCCA 781 CCACTGGAGA GGAAGCCAAG AATCCCAACA CGTCCATCCC TTATGCTATC ACTGCCTCCC 841 TGGTCATCTG CCTGACAGCA TATGTGTCTG TGAGCGTGAT CTTAACTCTG ATGGTGCCAT 901 ATTATACCAT TGACACGGAA TCCCCACTCA TGGAGATGTT TGTGGCTCAT GGGTTCTATG 961 CTGCCAAATT CGTAGTGGCC ATTGGGTCGG TTGCAGGACT GACAGTCAGC TTGCTGGGGT 1021 CCCTCTTCCC GATGCCGAGG GTCATTTATG CCATGGCTGG TGACGGGCTC CTTTTCAGGT 1081 TCCTGGCTCA CGTCAGCTCC TACACAGAGA CACCAGTGGT GGCCTGCATC GTGTCGGGGT 1141 TCCTGGCAGC GCTCCTCGCA CTGTTGGTCA GCTTGAGAGA CCTGATAGAG ATGATGTCTA 1201 TCGGCACGCT CCTGGCCTAC ACCTTGGTCT CTGTCTGTGT CTTGCTCCTT CGATACCAAC 1261 CTGAGAGTGA CATTGATGGT TTTGTCAAGT TCTTGTCTGA GGAGCACACC AAGAAGAAGG 1321 AGGGCATTCT GGCTGACTGT GAGAAGGAAG CTTGTTCTCC TGTGAGTGAG GGGGATGAGT 1381 TTTCTGGCCC AGCCACCAAC ACATGTGGGG CCAAGAACTT ACCATCCTTG GGAGACAATG 1441 AGATGCTCAT AGGGAAATCA GACAAGTCAA CCTACAACGT CAACCACCCC AATTACGGCA 1501 CCGTGGACAT GACCACAGGC ATAGAAGCTG ATGAATCCGA AAATATTTAT CTCATCAAGT 1561 TAAAGAAGCT GATTGGGCCT CATTATTACA CCATGAGAAT CCGGCTGGGC CTTCCAGGCA 1621 AAATGGACCG GCCCACAGCA GCGACGGGGC ACACGGTGAC CATCTGCGTG CTCCTGCTCT 1681 TCATCCTCAT GTTCATCTTC TGCTCCTTCA TCATCTTTGG TTCTGACTAC ATCTCAGAGC 1741 AGAGCTGGTG GGCCATCCTT CTGGTTGTTC TGATGGTGCT GCTGATCAGC ACCCTGGTGT 1801 TTGTGATCCT GCAGCAGCCA GAGAACCCCA AGAAGCTGCC CTACATGGCC CCTTGCCTCC 1861 CCTTTGTGCC TGCCTTTGCC ATGCTGGTGA ACATCTATCT CATGCTAAAG CTCTCCACCA 1921 TCACATGGAT CCGGTTTGCG GTCTGGTGCT TTGTGGGTCT GCTCATTTAT TTTGGATATG 1981 GCATCTGGAA CAGCACCCTG GAAATCAGCG CTCGAGAAGA GGCCCTGCAC CAAAGCACGT 2041 ACCAACGCTA CGACGTGGAT GACCCCTTCT CAGTGGAGGA GGGTTTCTCC TACGCCACAG 2101 AGGGCGAGAG CCAGGAGGAC TGGGGCGGGC CCACTGAAGA CAAAGGCTTC TATTACCAAC 2161 AGATGTCAGA TGCGAAGGCA AACGGCCGGA CAAGTAGCAA AGCGAAGAGC AAAAGCAAAC 2221 ACAAACAGAA CTCAGAGGCC CTGATTGCAA ATGATGAGTT AGATTACTCT CCAGAGTACC 2281 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2341 aac