Construct: ORF ccsbBroadEn_12424
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000089.1_s300c1, BRDN0000397707
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDH26 (60437)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 60437 | CDH26 | cadherin 26 | NM_001348204.2 | 100% | 100% | |
| 2 | human | 60437 | CDH26 | cadherin 26 | NM_021810.6 | 75.1% | 75.1% | 97_219del |
| 3 | human | 60437 | CDH26 | cadherin 26 | XM_017028001.1 | 15.4% | 14.8% | (many diffs) |
| 4 | human | 60437 | CDH26 | cadherin 26 | XM_017027999.1 | 15% | 14.4% | (many diffs) |
| 5 | human | 60437 | CDH26 | cadherin 26 | NM_177980.4 | 14.7% | 14.1% | (many diffs) |
| 6 | human | 60437 | CDH26 | cadherin 26 | XM_017027998.1 | 14.6% | 14% | (many diffs) |
| 7 | human | 60437 | CDH26 | cadherin 26 | NR_145482.2 | 7.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 438
- ORF length:
- 372
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA ACCTCTGATA TGGACATGGT CAGATGTTGA AGGCCAGAGG CCGGCTCTGC 121 TCATCTGCAC AGCTGCAGCA GGACCCACGC AGGGAGTTAA GGCTTACCCA GATGCCACAA 181 TGCACAGACA ACTCCTGGCT CCGGTGGAAG GAAGGATGGC AGAGACATTG AATCAGAAAC 241 TCCATGTTGC CAATGTGCTG GAAGATGACC CCGGCTACCT ACCTCACGTC TACAGCGAGG 301 AAGGGGAGTG TGGAGGGGCC CCATCCCTCA GCTCTCTGGC CAGCTTGGAA CAGGAGTTGC 361 AACCTGATTT GCTGGACTCT TTGGGTTCAA AAGCGACTCC GTTTGAGGAA ATATATTCAG 421 AGTCAGGTGT TCCTTCCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 481 gcttatcaat ttgttgcaac gaac