Construct: ORF ccsbBroadEn_12470

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016704.1_s300c1, BRDN0000394074
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM168 (64418)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64418 TMEM168 transmembrane protein 168 XM_024446869.1 73.4% 73.4% 0_1ins339
2 human 64418 TMEM168 transmembrane protein 168 NM_001287497.2 61.1% 61.1% 1_813del
3 human 64418 TMEM168 transmembrane protein 168 NM_022484.6 61.1% 61.1% 1_813del
4 human 64418 TMEM168 transmembrane protein 168 XM_017012523.2 61.1% 61.1% 1_813del
5 human 64418 TMEM168 transmembrane protein 168 XR_001744854.2 31% 1_1185del;1500_1689del;2654_4121del
6 human 64418 TMEM168 transmembrane protein 168 NR_109840.2 17.3% (many diffs)
7 human 64418 TMEM168 transmembrane protein 168 XR_001744853.2 16.6% (many diffs)
8 human 64418 TMEM168 transmembrane protein 168 XM_017012524.2 16.1% 15.1% (many diffs)
9 mouse 101118 Tmem168 transmembrane protein 168 NM_001347059.1 65.8% 70.4% (many diffs)
10 mouse 101118 Tmem168 transmembrane protein 168 NM_028990.5 54.8% 58.5% (many diffs)
11 mouse 101118 Tmem168 transmembrane protein 168 XM_006504952.3 54.8% 58.5% (many diffs)
12 mouse 101118 Tmem168 transmembrane protein 168 XM_006504953.3 54.8% 58.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT TGAGCTTACA TTTTTTATTC TTTCCGCATT CAAACTTAGA GACACTCACC
121TCTGGTATTT TGTAATACCT GGCTTTTCCA TTTTTGGAAT TTTCTGGATG ATTTGTCATA
181TTATTTTTCT TTTAACTCTT TGGGGATTCC ATACCAAATT AAATGACTGC CATAAAGTAT
241ATTTTACTCA CAGGACAGAT TACAATAGCC TTGATAGAAT CATGGCATCC AAAGGGATGC
301GCCATTTTTG CTTGATTTCA GAGCAGTTGG TGTTCTTTAG TCTTCTTGCA ACAGCGATTT
361TGGGAGCAGT TTCCTGGCAG CCAACAAATG GAATTTTCTT GAGCATGTTT CTAATCGTTT
421TGCCATTGGA ATCCATGGCT CATGGGCTCT TCCATGAATT GGGTAACTGT TTAGGAGGAA
481CATCTGTTGG ATATGCTATT GTGATTCCCA CCAACTTCTG CAGTCCTGAT GGTCAGCCAA
541CACTGCTTCC CCCAGAACAT GTACAGGAGT TAAATTTGAG GTCTACTGGC ATGCTCAATG
601CTATCCAAAG ATTTTTTGCA TATCATATGA TTGAGACCTA TGGATGTGAC TATTCCACAA
661GTGGACTGTC ATTTGATACT CTGCATTCCA AACTAAAAGC TTTCCTCGAA CTTCGGACAG
721TGGATGGACC CAGACATGAT ACGTATATTT TGTATTACAG TGGGCACACC CATGGTACAG
781GAGAGTGGGC TCTAGCAGGT GGAGATACAC TACGCCTTGA CACACTTATA GAATGGTGGA
841GAGAAAAGAA TGGTTCCTTT TGTTCCCGGC TTATTATCGT ATTAGACAGC GAAAATTCAA
901CCCCTTGGGT GAAAGAAGTG AGGAAAATTA ATGACCAGTA TATTGCAGTG CAAGGAGCAG
961AGTTGATAAA AACAGTAGAT ATTGAAGAAG CTGACCCGCC ACAGCTAGGT GACTTTACAA
1021AAGACTGGGT AGAATATAAC TGCAACTCCA GTAATAACAT CTGCTGGACT GAAAAGGGAC
1081GCACAGTGAA AGCAGTATAT GGTGTGTCAA AACGGTGGAG TGACTACACT CTGCATTTGC
1141CAACGGGAAG CGATGTGGCC AAGCACTGGA TGTTACACTT TCCTCGTATT ACATATCCCC
1201TAGTGCATTT GGCAAATTGG TTATGCGGTC TGAACCTTTT TTGGATCTGC AAAACTTGTT
1261TTAGGTGCTT GAAAAGATTA AAAATGAGTT GGTTTCTTCC TACTGTGCTG GACACAGGAC
1321AAGGCTTCAA ACTTGTCAAA TCTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)