Construct: ORF ccsbBroadEn_12536
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014929.1_s300c1, BRDN0000388599
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SECISBP2 (79048)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79048 | SECISBP2 | SECIS binding protein 2 | NM_001354698.2 | 10.7% | 8.1% | 183_303del;374_2355del |
| 2 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XM_024447666.1 | 10.6% | 8.1% | 183_303del;374_2358del |
| 3 | human | 79048 | SECISBP2 | SECIS binding protein 2 | NM_001354696.2 | 10.3% | 7.8% | 183_303del;374_2445del |
| 4 | human | 79048 | SECISBP2 | SECIS binding protein 2 | NM_001354697.2 | 10.2% | 7.8% | 183_303del;374_2448del |
| 5 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XM_017015122.2 | 10.1% | 7.7% | 183_303del;374_2472del |
| 6 | human | 79048 | SECISBP2 | SECIS binding protein 2 | NM_001282688.2 | 9.8% | 7.5% | 183_303del;374_2559del |
| 7 | human | 79048 | SECISBP2 | SECIS binding protein 2 | NM_024077.5 | 9.8% | 7.4% | 183_303del;374_2562del |
| 8 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XR_929843.1 | 6.9% | (many diffs) | |
| 9 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XM_024447667.1 | 6.6% | 1.9% | 0_1ins98;155_2226del |
| 10 | human | 79048 | SECISBP2 | SECIS binding protein 2 | NM_001282689.2 | 6.3% | 1.8% | 0_1ins98;155_2343del |
| 11 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XM_006717282.2 | 6.3% | 1.8% | 0_1ins98;155_2343del |
| 12 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XR_002956807.1 | 6.3% | (many diffs) | |
| 13 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XR_001746377.1 | 5.9% | (many diffs) | |
| 14 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XR_929840.1 | 5.3% | (many diffs) | |
| 15 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XR_001746378.1 | 3.9% | (many diffs) | |
| 16 | human | 79048 | SECISBP2 | SECIS binding protein 2 | XR_001746376.1 | 3.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 318
- ORF length:
- 252
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GTCGGAGGGG CCGCGGGAGC CCGAAAGCGA GGGCATCAAG TTATCAGCAG 121 ATGTCAAACC ATTTGTCCCC AGATTTGCCG GGCTCAATGT GGCATGGTTA GAGTCCTCAG 181 AAGCATGTGT CTTCCCCAGC TCTGCAGCCA CATACTATCC GTTTGTTCAG GAACCACCAG 241 TGACAGAAAT GTTTACTCAG TGCCTGGCTC CCAGTATCTT TATAACCAAC CCAGTTGTTA 301 CCGAGGTTTT CAAACAGTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 361 gcttatcaat ttgttgcaac gaac