Construct: ORF ccsbBroadEn_12562
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011842.1_s300c1, BRDN0000397867
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FCRL2 (79368)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002319.1 | 45.9% | 42.6% | (many diffs) |
| 2 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002318.1 | 45.7% | 42.2% | (many diffs) |
| 3 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002317.1 | 43% | 39.9% | (many diffs) |
| 4 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_011509976.2 | 41.5% | 41.5% | 309_1160del |
| 5 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_011509975.3 | 40% | 39.3% | 309_1160del;1421_1446del;1473_1474insTGAAGAAATCA |
| 6 | human | 79368 | FCRL2 | Fc receptor like 2 | NM_030764.4 | 39.7% | 39.7% | 309_1160del;1393_1458del |
| 7 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_011509974.3 | 38.3% | 37.6% | (many diffs) |
| 8 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002316.1 | 37.6% | 34.9% | (many diffs) |
| 9 | human | 79368 | FCRL2 | Fc receptor like 2 | NR_125358.2 | 36.2% | 1_59del;666_1671del | |
| 10 | human | 79368 | FCRL2 | Fc receptor like 2 | NM_001159488.2 | 32.9% | 31.6% | 309_1160del;1305_1306ins115;1332_1333insTGAAGAAATCA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 672
- ORF length:
- 606
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCTGTGGTCA TTGCTGGTCA TCTTTGATGC AGTCACTGAA CAGGCAGATT 121 CGCTGACCCT TGTGGCGCCC TCTTCTGTCT TCGAAGGAGA CAGCATCGTT CTGAAATGCC 181 AGGGAGAACA GAACTGGAAA ATTCAGAAGA TGGCTTACCA TAAGGATAAC AAAGAGTTAT 241 CTGTTTTCAA AAAATTCTCA GATTTCCTTA TCCAAAGTGC AGTTTTAAGT GACAGTGGTA 301 ACTATTTCTG TAGTACCAAA GGACAACTCT TTCTCTGGGA TAAAACTTCA AATATAGTAA 361 AGATAAAAGT CCAAGGACCT GATGGCTATA GAAGAGACCT CATGACAGCT GGAGTTCTCT 421 GGGGACTGTT TGGTGTCCTT GGTTTCACTG GTGTTGCTTT GCTGTTGTAT GCCTTGTTCC 481 ACAAGATATC AGGAGAAAGT TCTGCCACTA ATGAACCCAG AGGGGCTTCC AGGCCAAATC 541 CTCAAGAGTT CACCTATTCA AGCCCAACCC CAGACATGGA GGAGCTGCAG CCAGTGTATG 601 TCAATGCAAA CATCAGGACA CTTCTGGAGA ACAAGGACTC CCAAGTCATC TACTCTTCTG 661 TGAAGAAATC ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 721 caatttgttg caacgaac