Construct: ORF ccsbBroadEn_12597
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015377.1_s300c1, BRDN0000388545
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OGFOD3 (79701)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | NM_024648.3 | 16.7% | 14.7% | (many diffs) |
| 2 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_933942.3 | 7.5% | (many diffs) | |
| 3 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_430034.4 | 7.5% | (many diffs) | |
| 4 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_001752626.2 | 7.4% | (many diffs) | |
| 5 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_002958069.1 | 6.3% | (many diffs) | |
| 6 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | NR_033265.2 | 3.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 231
- ORF length:
- 165
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CACCTCTCTC TCTTCTCCTC TCCCAGGTCG CGTCTCCTTC TTCACCTCGG 121 GGTCCGAGAA CCTACACCGC GTGGAGAAGG TCCACTGGGG CACCCGTTAC GCCATTACCA 181 TCGCCTTCAG CTGCAACCCC GACCATGGCA TCGAGGACCC AGCGTTCCCG TACCCAACTT 241 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac