Transcript: Human XR_002958069.1

PREDICTED: Homo sapiens 2-oxoglutarate and iron dependent oxygenase domain containing 3 (OGFOD3), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
OGFOD3 (79701)
Length:
2521
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958069.1
NBCI Gene record:
OGFOD3 (79701)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958069.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231854 AGGTGTCACCGATGTCGTCAT pLKO_005 482 3UTR 100% 4.050 5.670 N OGFOD3 n/a
2 TRCN0000231856 AGAGGAGGACTTCCGGTTATA pLKO_005 674 3UTR 100% 13.200 9.240 N OGFOD3 n/a
3 TRCN0000139514 CACCTTCTTCTCCCGCATAAA pLKO.1 776 3UTR 100% 13.200 9.240 N OGFOD3 n/a
4 TRCN0000231857 CACCTTCTTCTCCCGCATAAA pLKO_005 776 3UTR 100% 13.200 9.240 N OGFOD3 n/a
5 TRCN0000231855 TTTGTGAACCTGTACAGATAC pLKO_005 624 3UTR 100% 10.800 7.560 N OGFOD3 n/a
6 TRCN0000143591 GAAGCACTTTGTGAACCTGTA pLKO.1 617 3UTR 100% 4.050 2.835 N OGFOD3 n/a
7 TRCN0000231858 TGCTGTACCTCTCCAACTACC pLKO_005 883 3UTR 100% 4.050 2.835 N OGFOD3 n/a
8 TRCN0000143861 CACTTTGTGAACCTGTACAGA pLKO.1 621 3UTR 100% 3.000 2.100 N OGFOD3 n/a
9 TRCN0000140744 GATTCTGGAAGCTGAGAGCAT pLKO.1 1115 3UTR 100% 2.640 1.848 N OGFOD3 n/a
10 TRCN0000142797 CAAGAAGTTAATGGACCGAGA pLKO.1 1011 3UTR 100% 2.160 1.512 N OGFOD3 n/a
11 TRCN0000122673 GCATCTGACCAAGCCCACCTT pLKO.1 761 3UTR 100% 0.880 0.616 N OGFOD3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958069.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08948 pDONR223 100% 39.3% None 1_152del;967C>G;1146_2521del n/a
2 ccsbBroad304_08948 pLX_304 0% 39.3% V5 1_152del;967C>G;1146_2521del n/a
3 TRCN0000465404 TCGGGACTCCCCCGGGGGTGGAAC pLX_317 29.5% 39.3% V5 1_152del;967C>G;1146_2521del n/a
4 ccsbBroadEn_12597 pDONR223 100% 6.3% None (many diffs) n/a
5 ccsbBroad304_12597 pLX_304 0% 6.3% V5 (many diffs) n/a
6 TRCN0000478200 GCAACGCTATAACCCCTGCGCACA pLX_317 100% 6.3% V5 (many diffs) n/a
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