Construct: ORF ccsbBroadEn_12601
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001553.1_s300c1, BRDN0000387999
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD55 (79722)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79722 | ANKRD55 | ankyrin repeat domain 55 | XM_011543646.1 | 83.4% | 75.6% | 1_188del;286_287insCAGAA |
| 2 | human | 79722 | ANKRD55 | ankyrin repeat domain 55 | XM_017009854.1 | 70.1% | 63.7% | 1_410del;508_509insCAGAA |
| 3 | human | 79722 | ANKRD55 | ankyrin repeat domain 55 | NM_024669.3 | 53% | 53% | 1_864del |
| 4 | human | 79722 | ANKRD55 | ankyrin repeat domain 55 | XM_017009853.1 | 53% | 53% | 1_864del |
| 5 | human | 79722 | ANKRD55 | ankyrin repeat domain 55 | XM_017009852.1 | 51.9% | 47.3% | 1_896del;994_995insCAGAA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1047
- ORF length:
- 978
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACAGCAAC CTGCGGGACA TCAATGAGAG CACGCCCTTG GCCTATGCCC 121 TGTACTGCGG TCACACGGCG TGTGTCAAAC TCCTCTCCCA AGAGAGCAGA ACAGAGCCTA 181 CTCGACCCCC TCCCTCCCAG AGCAGTCGGC CCCAGAAGAA GGAGAGACGG TTCAACGTGC 241 TCAACCAAAT ATTCTGCAAA AACAAGAAAG AAGAGCAGAG AGCCCATCAG AAGGATCCCA 301 GCAGGGACCG ATACAGAGAG GAGGACACCT CAGAAGTCAA TGACATCATC ACCACCTTTG 361 ATAGCATCGT GGGTACCAAC TGCCAAGAAC AGCCTGGTGA TCAGGTGGCT ATGGTTGAAT 421 TTAAGAAGAA AACCTCAGAC AATTCAAAAT ATCTCTTACC AGAAAAGAAA CCGCTGGCCC 481 GTAAGGGGCT TCCACCAATC AGAACGCAGA GTCTCCCACC CATCACCCTG GGCAATAACT 541 TCCTAACAGC CTCCCATAGG GCCACTTCCC ATGCAGGCCT GAGCTCTGCT CCTCATCATA 601 TGGCCCAGCG ATCTCAGAAA AGTCGAAGTG AGCAGGATTT ATTAAATAAC AGAACTGGCT 661 GCCAGATGTT ACTAGATAAC CCCTGGAAGA GTGATTCTAA TCAGGTATTT TCCTACAAAG 721 TTTGGACTGT GTCTTCTTCT GATAAGCTGC TGGACAGATT GCTCAGTGTC CGGCCTGGTC 781 ACCAAGAGGT CTCCGTGCCA CCACACCTTC GCCATCTACA TAATCCATCA TCAGGACAAA 841 ATTTTCAGCA TCTTTCCCCA AACAGACACA AAATCAGGGA TCTTCCTTTC ACTCGGAACA 901 ACCTAGCTCC CCTACCAGAT CAAAAATTTC TATCTGGAGA ACCTCTGCGG ACAAACCGAG 961 TGCTTCCTGC AATTCCAAGT CAACGAAGAC ACAGCACAGC AGCAGAAGAG AGTGAACATT 1021 CTGCCAACCC CACCAGTGAT GAAAATTTGC CAACTTTCTT GTACAAAGTt ggcattataa 1081 gaaagcattg cttatcaatt tgttgcaacg aac