Construct: ORF ccsbBroadEn_12627

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008081.1_s300c1, BRDN0000385446
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZMYM1 (79830)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79830 ZMYM1 zinc finger MYM-type contai... NM_001289088.1 78.9% 78.7% 2696_2697insT;2706_3426del
2 human 79830 ZMYM1 zinc finger MYM-type contai... NM_001289090.1 78.9% 78.7% 2696_2697insT;2706_3426del
3 human 79830 ZMYM1 zinc finger MYM-type contai... NM_024772.5 78.9% 78.7% 2696_2697insT;2706_3426del
4 human 79830 ZMYM1 zinc finger MYM-type contai... NM_001289089.1 77.2% 77% 959_960ins57;2639_2640insT;2649_3369del
5 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449823.1 76.9% 76.7% 1_90del;2786_2787insT;2796_3516del
6 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449822.1 75.5% 75.3% 1_153del;2849_2850insT;2859_3579del
7 human 79830 ZMYM1 zinc finger MYM-type contai... XM_011542163.3 74.5% 74.3% (many diffs)
8 human 79830 ZMYM1 zinc finger MYM-type contai... NM_001319955.1 72.3% 72.1% 0_1ins225;2471_2472insT;2481_3201del
9 human 79830 ZMYM1 zinc finger MYM-type contai... XM_017002358.1 72.3% 72.1% 0_1ins225;2471_2472insT;2481_3201del
10 human 79830 ZMYM1 zinc finger MYM-type contai... XM_017002359.1 71.3% 71.1% (many diffs)
11 human 79830 ZMYM1 zinc finger MYM-type contai... XM_011542165.3 62.2% 61.9% 0_1ins573;2123_2124insT;2133_2853del
12 human 79830 ZMYM1 zinc finger MYM-type contai... XM_017002360.2 62.2% 61.9% 0_1ins573;2123_2124insT;2133_2853del
13 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449824.1 62.2% 61.9% 0_1ins573;2123_2124insT;2133_2853del
14 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449825.1 62.2% 61.9% 0_1ins573;2123_2124insT;2133_2853del
15 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449827.1 62.2% 61.9% 0_1ins573;2123_2124insT;2133_2853del
16 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449828.1 62.2% 61.9% 0_1ins573;2123_2124insT;2133_2853del
17 human 79830 ZMYM1 zinc finger MYM-type contai... XM_011542166.3 50.4% 47% 1_153del;1502_1503ins115;1596_1597ins1148
18 human 79830 ZMYM1 zinc finger MYM-type contai... NM_001289091.1 47.4% 47.1% 0_1ins1080;1616_1617insT;1626_2346del
19 human 79830 ZMYM1 zinc finger MYM-type contai... XM_024449833.1 47.4% 47.1% 0_1ins1080;1616_1617insT;1626_2346del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2772
ORF length:
2706
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAANAAAG
61TTGGCATGAA AGAACCACTT TTAGGTGGTG AGTGTGACAA GGCAGTGGCA TCACAGCTGG
121GGCTGCTAGA TGAAATTAAG ACAGAACCCG ACAATGCTCA AGAGTATTGT CATAGGCAAC
181AGTCCAGAAC TCAGGAGAAT GAACTGAAAA TAAATGCTGT GTTTTCAGAG AGTGCTTCAC
241AGTTGACTGC AGGCATTCAG CTTTCTCTGG CATCATCTGG CGTGAATAAA ATGCTTCCTT
301CAGTTTCAAC CACAGCTATT CAGGTTTCCT GTGCTGGTTG TAAAAAAATT CTCCAGAAGG
361GGCAAACTGC TTATCAGAGG AAAGGATCTG CTCAACTTTT CTGCTCCATA CCATGCATCA
421CTGAATACAT TTCATCTGCC AGTTCACCAG TTCCTTCTAA GAGAACTTGT TCAAACTGCT
481CAAAAGACAT TTTAAATCCA AAGGATGTGA TTAGTGTCCA GCTGGAAGAC ACTACCTCTT
541GCAAAACTTT TTGCAGCCTA TCTTGTCTTT CATCATATGA AGAAAAAAGA AAACCATTTG
601TTACCATATG TACTAATAGC ATTTTGACCA AGTGCAGCAT GTGCCAGAAG ACTGCTATTA
661TTCAGTATGA AGTAAAATAC CAAAATGTGA AACATAATCT TTGCAGTAAT GCCTGCCTTT
721CAAAGTTTCA CTCTGCTAAC AACTTCATCA TGAACTGCTG TGAGAACTGT GGCACTTACT
781GTTACACCAG CTCTAGTCTG TCCCACATAC TTCAGATGGA AGGACAGTCT CATTACTTTA
841ATAGTTCAAA GAGTATTACA GCATATAAGC AGAAACCTGC CAAACCACTT ATATCTGTTC
901CTTGCAAACC ATTGAAGCCC TCAGATGAAA TGATTGAGAC TACGAGTGAT TTGGGGAAGA
961CAGAGCTTTT CTGCTCTATT AATTGTTTCT CTGCATACAG TAAAGCTAAG ATGGAATCTT
1021CTTCAGTAAG TGTTGTTTCT GTGGTGCATG ATACTTCAAC AGAGCTTCTT TCTCCAAAGA
1081AAGATACGAC TCCAGTTATA AGCAATATAG TGTCATTGGC AGACACCGAT GTTGCCTTGC
1141CCATCATGAA CACTGATGTC TTACAAGATA CAGTTTCTTC AGTAACAGCA ACAGCAGATG
1201TCATTGTGGA TCTTTCTAAG AGTTCACCTA GTGAACCCAG TAATGCTGTT GCTAGTAGTA
1261GTACGGAACA GCCAAGCGTT TCACCATCTT CATCAGTATT CAGTCAGCAT GCAATTGGTT
1321CCAGTACAGA AGTACAAAAA GACAATATGA AATCTATGAA AATAAGTGAT GAACTATGTC
1381ACCCAAAATG TACATCCAAA GTACAAAAAG TTAAAGGTAA ATCACGAAGT ATTAAAAAAT
1441CTTGTTGTGC AGATTTTGAG TGTTTGGAAA ACAGTAAAAA AGATGTGGCA TTCTGTTATT
1501CATGCCAGTT GTTCTGCCAA AAATATTTTA GCTGTGGAAG AGAGTCATTT GCAACCCACG
1561GAACTTCTAA TTGGAAAAAA ACCCTGGAAA AATTCAGAAA GCATGAAAAA AGTGAAATGC
1621ATTTGAAGTC ATTGGAATTT TGGAGAGAAT ACCAATTTTG TGATGGAGCT GTCAGTGACG
1681ATTTATCTAT TCATTCGAAA CAGATTGAGG GAAATAAAAA GTACCTAAAG CTTATAATTG
1741AAAATATTTT ATTTCTTGGA AAGCAGTGTT TACCCTTAAG AGGAAACGAC CAGTCAGTTT
1801CATCTGTGAA TAAAGGCAAT TTTTTAGAAT TGTTAGAAAT GAGAGCAAAA GATAAAGGAG
1861AAGAAACATT TCGACTTATG AATTCACAAG TTGACTTCTA TAACAGTACA CAAATTCAAA
1921GTGATATTAT CGAAATAATA AAGACTGAAA TGTTGCAGGA TATTGTGAAT GAGATCAATG
1981ACTCCTCAGC ATTTTCAATC ATATGTGATG AGACAATCAA TAGTGCCATG AAAGAACAGC
2041TTTCAATTTG TGTAAGATAC CCACAAAAAT CATCAAAGGC TATCTTAATT AAGGAAAGAT
2101TCTTGGGTTT TGTTGATACT GAGGAGATGA CTGGGACCCA CTTACATAGG ACTATCAAAA
2161CTTATCTGCA GCAAATTGGA GTTGATATGG ATAAAATACA TGGCCAGGCC TATGATAGCA
2221CCACTAATTT GAAGATAAAA TTTAATAAAA TAGCAGCAGA ATTCAAGAAA GAAGAACCAA
2281GAGCTTTATA CATACATTGT TATGCACACT TTTTGGATTT ATCAATAATT AGGTTTTGTA
2341AAGAAGTAAA AGAACTCCGA AGTGCTCTAA AAACTCTCAG TTCTTTGTTC AACACTATTT
2401GTATGTCTGG GGAAATGTTG GCAAATTTTC GAAACATTTA TAGGCTAAGT CAAAACAAAA
2461CATGCAAGAA ACATATATCA CAATCATGTT GGACAGTCCA TGATCGTACA TTACTATCTG
2521TGATTGACAG TCTTCCAGAG ATTATTGAAA CATTGGAAGT TATAGCAAGC CATTCTTCAA
2581ATACAAGTTT CGCCGATGAA TTGAGTCATT TGCTGACATT GGTTTCCAAA TTTGAATTTG
2641TCTTTTGTTT GAAATTCCTG TATCGAGTGC TGAGTGTTAC AGGAATTCTT TCCAAAGAGC
2701TTCAAAATAA AACCATAGAC ATTTTTTCTT TGTCTTCAAA AATAGAAGCA ATTTTGGAAT
2761GTTTTATCAT CNGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2821caatttgttg caacgaac

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