Construct: ORF ccsbBroadEn_12633

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017254.1_s300c1, BRDN0000397566
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSPP1 (79848)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79848 CSPP1 centrosome and spindle pole... XM_011517611.3 57.1% 57% (many diffs)
2 human 79848 CSPP1 centrosome and spindle pole... XM_017013858.2 51.7% 51.6% (many diffs)
3 human 79848 CSPP1 centrosome and spindle pole... XM_024447284.1 48.3% 48.2% (many diffs)
4 human 79848 CSPP1 centrosome and spindle pole... NM_001291339.1 43.1% 43% (many diffs)
5 human 79848 CSPP1 centrosome and spindle pole... XM_024447283.1 40.7% 40.6% (many diffs)
6 human 79848 CSPP1 centrosome and spindle pole... XM_011517609.2 40.1% 40% (many diffs)
7 human 79848 CSPP1 centrosome and spindle pole... XM_017013856.2 37.5% 37.4% (many diffs)
8 human 79848 CSPP1 centrosome and spindle pole... XM_024447282.1 36.5% 36.4% (many diffs)
9 human 79848 CSPP1 centrosome and spindle pole... XM_017013855.2 36.3% 36.2% (many diffs)
10 human 79848 CSPP1 centrosome and spindle pole... XM_017013854.2 33.8% 33.7% (many diffs)
11 human 79848 CSPP1 centrosome and spindle pole... XM_006716477.3 33.6% 33.5% (many diffs)
12 human 79848 CSPP1 centrosome and spindle pole... NM_001363133.2 33.3% 33.2% (many diffs)
13 human 79848 CSPP1 centrosome and spindle pole... XM_024447281.1 33.3% 33.2% (many diffs)
14 human 79848 CSPP1 centrosome and spindle pole... NM_001363132.2 32.5% 32.4% (many diffs)
15 human 79848 CSPP1 centrosome and spindle pole... XM_017013852.2 31.9% 31.8% (many diffs)
16 human 79848 CSPP1 centrosome and spindle pole... XM_017013851.2 31.8% 31.8% (many diffs)
17 human 79848 CSPP1 centrosome and spindle pole... NM_001364870.1 31.8% 31.7% (many diffs)
18 human 79848 CSPP1 centrosome and spindle pole... NM_001363131.2 31.5% 31.4% (many diffs)
19 human 79848 CSPP1 centrosome and spindle pole... XM_024447279.1 31.5% 31.4% (many diffs)
20 human 79848 CSPP1 centrosome and spindle pole... NM_024790.6 30.9% 30.8% (many diffs)
21 human 79848 CSPP1 centrosome and spindle pole... XM_011517607.2 30.8% 30.7% (many diffs)
22 human 79848 CSPP1 centrosome and spindle pole... XM_024447278.1 30.8% 30.7% (many diffs)
23 human 79848 CSPP1 centrosome and spindle pole... XM_011517603.2 30.6% 30.5% (many diffs)
24 human 79848 CSPP1 centrosome and spindle pole... XM_017013850.2 30.6% 30.5% (many diffs)
25 human 79848 CSPP1 centrosome and spindle pole... NM_001364869.1 30.2% 30.2% (many diffs)
26 human 79848 CSPP1 centrosome and spindle pole... XM_017013849.2 30.2% 30.2% (many diffs)
27 human 79848 CSPP1 centrosome and spindle pole... XM_006716474.3 30.2% 30.1% (many diffs)
28 human 79848 CSPP1 centrosome and spindle pole... XM_017013848.2 29.9% 29.8% (many diffs)
29 human 79848 CSPP1 centrosome and spindle pole... XM_011517602.2 29.8% 29.7% (many diffs)
30 human 79848 CSPP1 centrosome and spindle pole... XM_017013847.2 29.7% 29.7% (many diffs)
31 human 79848 CSPP1 centrosome and spindle pole... XM_011517601.2 29.5% 29.4% (many diffs)
32 human 79848 CSPP1 centrosome and spindle pole... XM_011517600.2 29.2% 29.1% (many diffs)
33 human 79848 CSPP1 centrosome and spindle pole... XM_005251305.4 29% 28.9% (many diffs)
34 human 79848 CSPP1 centrosome and spindle pole... XM_011517599.2 28.8% 28.8% (many diffs)
35 human 79848 CSPP1 centrosome and spindle pole... XM_011517598.2 28.7% 28.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1203
ORF length:
1137
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG ACAGCCTTCT CCTATAGTTC CTGCTCTTCA GAACAAAATT GCAAGCAAAC
121TCCAAAGACC TCCTTCAGTT GACAGCATCA TACATTCCTT TATTCATGAA AGTTCCATGT
181CCAGGGCACA GTCACCCCCG GTACCTGCCA GGAAAAATCA GCTCCGTGCA GAAGAGGAGA
241AAAAAAATGT AATTATGGAA TTATCAGAAA TGAGAAAACA GCTTCGTAGT GAAGAGAGGC
301GTCTACAAGA GCGATTGCTA CACATGGACA GCGATGATGA AATTCCTATC AGGAAAAAGG
361AAAGGAATCC CATGGATATA TTTGATATGG CTAGACATCG GTTGCAAGCT CCTGTCAGAA
421GACAGTCCCC TAAGGGCTTA GACGCTGCCA CTTTTCAGAA TGTTCATGAT TTTAATGAGC
481TGAAAGATAG AGATTCAGAA ACACGAGTTG ATCTGAAATT TATGTACCTG GATCCTCCAA
541GAGATCATCA CACCTTAGAG ATTCAGCAGC AAGCCCTGCT AAGAGAGCAG CAGAAGAGGC
601TGAACAGAAT AAAAATGCAG GAAGGTGCCA AAGTTGACTT AGATGCCATC CCAAGTGCTA
661AAGTACGAGA GCAAAGAATG CCCAGAGATG ACACTAGTGA TTTCTTGAAA AACTCATTAT
721TGGAATCTGA TAGTGCTTTT ATTGGGGCTT ACGGTGAGAC ATATCCTGCC ATTGAAGATG
781ACGTCCTCCC TCCACCATCA CAGTTGCCCT CTGCACGGGA GCGCAGGAGG AACAAACGGA
841AAGGACTAGA CATTGATAGC AGTCGTCCTA ATGTAGCACC AGATGGTCTC TCTCTAAAAT
901CTATATCCAG TGTAAATGTT GATGAGCTTA GAGTGAGAAA TGAGGAACGA ATGCGAAGAC
961TGAATGAATT TCACAATAAA CCTATTAATA CAGATGATGA GAGTTCACTG GTTGACCCTG
1021ATGACATCAT GAAACACATA GGGGATGACG GATCAAACTC TGTAGCAACT GAGCCCTGGC
1081TCCGCCCTGG CACTTCAGAA ACGCTGAAAC GTTTCATGGC AGAGCAGCTG AACCAGGAGC
1141AGCAGCAGAT TCCTGGAAAA CCAGGCACTT TCACTTGGCA GGGCCTGTCG ACTGCACATG
1201GTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1261gcaacgaac

Download FASTA (ORF) (Full)