Construct: ORF ccsbBroadEn_12652
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012583.1_s300c1, BRDN0000387418
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CPED1 (79974)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79974 | CPED1 | cadherin like and PC-estera... | NM_001105533.1 | 71.7% | 71.7% | (many diffs) |
| 2 | human | 79974 | CPED1 | cadherin like and PC-estera... | XM_017012649.2 | 70.5% | 70.3% | (many diffs) |
| 3 | human | 79974 | CPED1 | cadherin like and PC-estera... | XM_024446941.1 | 65.1% | 64.4% | (many diffs) |
| 4 | human | 79974 | CPED1 | cadherin like and PC-estera... | NM_024913.5 | 54.3% | 53.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1755
- ORF length:
- 1689
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA ATTAAAGCCG AGTACTTCGA GTCACCTTTT AAAAACAGTG AAGCCACGTG 121 TGTGGAAACC AGGGGACTGG AGTCGTGAAC AGCTGAATGA AACGACAGTC CTTGCTCCAC 181 ATGAAACAAT CTTTCGAGCC GAAGATCTAT CTGTGATTCT TAAAGCGTAT GTGTTGGTGA 241 CGTCCTTAAC CCCTTTGCGT GCATTCATTC ATTCGACTGG CACAGTTTGG AATCCACCAA 301 AGAAAAAACG CTTCACTGTC AAGCTGCAAA CATTTTTTGA GACATTCCTG AGAGCCAGTT 361 CACCTCAACA GGCTTTTGAC ATTATGAAGG AAGCAATTGG CAAACTACTG CTAGCCGCTG 421 AAGTATTCAG TGAAACATCT ACTCTGGGAC CAAAGACCTT CCATAGATGC AGATTCTGCT 481 TTCAACTTCT AACTTTTGAT ATTGGTTATG GCAGTTTCAT GTACCCTGTA GTGCTCCAGG 541 TACACGAGCA TTTAAATTTT CAAGATTATG ATAATATGGA TTTTGAGGAC CAAAATACAG 601 AAGAATTCCT TTTAAATGAC ACTTTCAATT TTCTCTTCCC TAATGAATCA TCACTTTCCA 661 TATTTTCTGA GATATTTCAG AGACTTTATA GATCAGATGT TTTCAAGGGT GAAAACTATC 721 AAAAGGAACT AAATCAGTGT CTGTCCTTAG AAGAAATTAA CTCAATTATG ACTTTCATAA 781 AGGAACTTGG AAGTCTGGGA CAATTCCAAC TGCTCTTCCC ATCTACTACT CCTGGGATTC 841 AGTCACTGAT GCATGAATTT TATGATGTGG CAAATCCTGT GGGAAATCCT GGCTCAGTCC 901 TGACCCAATA CTGGTCTCTT TTAAATGTAT TTGAACAATT TCAGTTCATG AATAAAAAGA 961 CACAGCCACA TCCACTGGAA TGGAATTCTT TCACAGAAGA TAAGAACATT GAAAAACCAC 1021 AAGTGCCATT TGATGCAATA GAAAATAAAA AAGCTGGAGT TCCACAAATT AAAAATGAAA 1081 ATAAAGAAAT ACATTGCAGT GATGATGAAA ACACACCATG TCATATCAAG CAGATCTTCA 1141 CACATCCACA TTTGGAACTA AATCCTGACT TTCATCCAAA GATCAAAGAT TATTACTGTG 1201 AAGTCCCATT TGATGTGGTA ACAGTGACAA TTGGAGTGGA AACTCCTAAG TGTCTGTGCA 1261 AGGTGCACCT GTACGAGCAG GCAGGGCCAA GCTTTGCCAG CTACCCTCTG GGCTTAGGAA 1321 TGAACAAAAT CTCAATATTT GTTGTGGATG AATCTCCAGC ACACGGTGAG ACTCTGATCA 1381 CGTACAAACT CACCATCTAT AGAGAAGACC GCCCAAGTCT GCCCTTGTTT GAGGCCTTCA 1441 CAGCATGTGG TTTTGTGCAG GATTGTGGTT TGCTGATTCA TCCAGAGGAA ACCTGTGGGT 1501 TACAGCCTAT TTCTTCTGAC TACATTGAAG CCATTTTACA GTCTGAACTA AAAAGATGTC 1561 CATCTGGGGA CATGAAAGGC CAGTGGATTG TGCCTTGCCT TAGTTGTTCG GACAACAGGA 1621 CGTGTGACTG GAGAGAAATA ACCTGGCAGC CCCACAACTG CCAATATGGT GTCCTAACTA 1681 AGCCTCAACT CCAGCAGTGC CTGGGAGGAA GGAAGTTGGG TGTCGATGTC CAGAGAGTTC 1741 CTAGAAGCCG TAATTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1801 tatcaatttg ttgcaacgaa c