Construct: ORF ccsbBroadEn_12687
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008183.1_s300c1, BRDN0000393480
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAAP100 (80233)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80233 | FAAP100 | FA core complex associated ... | XM_006722112.3 | 31.7% | 31.6% | (many diffs) |
| 2 | human | 80233 | FAAP100 | FA core complex associated ... | XM_017025162.1 | 31.7% | 31.6% | (many diffs) |
| 3 | human | 80233 | FAAP100 | FA core complex associated ... | XM_017025163.1 | 31.7% | 31.6% | (many diffs) |
| 4 | human | 80233 | FAAP100 | FA core complex associated ... | XM_006722111.2 | 29.1% | 21.4% | (many diffs) |
| 5 | human | 80233 | FAAP100 | FA core complex associated ... | NM_025161.6 | 26.3% | 26.2% | (many diffs) |
| 6 | human | 80233 | FAAP100 | FA core complex associated ... | XR_001752653.1 | 18.3% | (many diffs) | |
| 7 | human | 80233 | FAAP100 | FA core complex associated ... | NR_033338.2 | 18.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 765
- ORF length:
- 699
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCAGTGTCTG TGCTTCCCTG GCCTGGCCCC GCCACACACA CGGGCCCCCT 121 CCCCACTCGG CCCCACCCGA GACCCTGTGG CCACTTTTCT GGAAACTTGT CGGGAGCCTG 181 GCAGCCAGCC AGCAGGACCC GCCTCCCTGC GGGCCGAGTA CCTGCCCCCA TCTGTGGCTT 241 CCATCAAGGT GTCGGCGGAG CTGCTCAGAG CTGCCTTGAA GGACGGCCAC TCAGGCGTGC 301 CCCTGTGCTG TGCCACCCTG CAGTGGCTCC TTGCTGAGAA TGCTGCTGTG GACGTCGTGA 361 GGGCCCGAGC ACTATCTTCC ATCCAGGGAG TGGCCCCTGA TGGCGCCAAC GTTCACCTCA 421 TCGTCCGAGA GGTGGCCATG ACCGACCTGT GCCCAGCAGG GCCCATCCAG GCCGTGGAGA 481 TTCAAGTGGA AAGCTCCTCT CTGGCCGACA TTTGCAGGGC GCACCATGCC GTTGTCGGGC 541 GCATGCAGAC GATGGTGACA GAGCAGGCCG CCCAGGGCTC CAGCGCTCCT GATCTCCGTG 601 TGCAGTACCT CCGCCAGATC CACGCCAACC ACGAGACACT GCTGCGGGAG GTGCAGACCC 661 TGCGCGACCG GCTCTGCACG GAGGATGAGG CCAGCTCCTG TGCCACCGCC CAGAGGCTGC 721 TACAGGTGTA CCGGCAGCTG CGCCACCCCA GCCTCATCCT GCTGTGCCCA ACTTTCTTGT 781 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c