Construct: ORF ccsbBroadEn_12694
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005169.1_s300c1, BRDN0000390816
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADAM33 (80332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028083.1 | 21.3% | 21.2% | 255_1188delinsG |
| 2 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028082.1 | 19.4% | 19.3% | 255_1305delinsG |
| 3 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_006723644.2 | 17.3% | 17.1% | 255_1467delinsG |
| 4 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028081.2 | 15.4% | 15.3% | 255_1641delinsG |
| 5 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529371.2 | 15.1% | 15% | 255_1680delinsG |
| 6 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028080.2 | 15.1% | 15% | 255_1680delinsG |
| 7 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529370.1 | 13.3% | 13.2% | 255_1905delinsG |
| 8 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | NM_153202.3 | 10.7% | 10.6% | 255_2361delinsG |
| 9 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529367.1 | 10.4% | 10.4% | 256_2436del |
| 10 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | NM_001282447.2 | 10.4% | 10.3% | 255_2436delinsG |
| 11 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | NM_025220.4 | 10.4% | 10.3% | 255_2439delinsG |
| 12 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529366.1 | 10.3% | 10.3% | 256_2475del |
| 13 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_006723640.1 | 10.2% | 10.2% | 255_2469delinsG |
| 14 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_005260843.1 | 10.2% | 10.1% | 255_2478delinsG |
| 15 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_937152.1 | 10.2% | 1_104del;359_2482delinsG | |
| 16 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_937151.1 | 10.2% | 1_104del;359_2483delinsG | |
| 17 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_001754405.1 | 7.1% | 1_104del;359_3540delinsG | |
| 18 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_002958534.1 | 6.9% | 1_104del;359_3649delinsG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 321
- ORF length:
- 255
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CTGGAGGCCC CGGAGAGCTC GGGGGACCCC GTTGCTGCTG CTGCTACTAC 121 TGCTGCTGCT CTGGCCAGTG CCAGGCGCCG GGGTGCTTCA AGGACATATC CCTGGGCAGC 181 CAGTCACCCC GCACTGGGTC CTGGATGGAC AACCCTGGCG CACCGTCAGC CTGGAGGAGC 241 CGGTCTCGAA GCCAGACATG GGGCTGGTGG CCCTGGAGGC TGAAGGCCAG GAGCTCCTGC 301 TTGAGCTGGA GAAGAACCAG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 361 attgcttatc aatttgttgc aacgaac