Construct: ORF ccsbBroadEn_12697
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002516.1_s300c1, BRDN0000456177
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAF3IP3 (80342)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_011510019.2 | 86.6% | 86.6% | (many diffs) |
| 2 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_011510018.3 | 82.9% | 82.7% | (many diffs) |
| 3 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_017002400.2 | 72.5% | 72.6% | (many diffs) |
| 4 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_017002399.2 | 66.2% | 66.1% | (many diffs) |
| 5 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_001320143.1 | 63.8% | 63.7% | (many diffs) |
| 6 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_025228.4 | 63.8% | 63.7% | (many diffs) |
| 7 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_001320144.2 | 60.1% | 60% | (many diffs) |
| 8 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NR_109871.2 | 56.3% | (many diffs) | |
| 9 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_001737439.2 | 53.1% | (many diffs) | |
| 10 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_247044.3 | 50.1% | (many diffs) | |
| 11 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_001737440.2 | 45.5% | (many diffs) | |
| 12 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XR_001737438.2 | 30% | (many diffs) | |
| 13 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | NM_001287754.2 | 19.8% | 19.5% | (many diffs) |
| 14 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_024449954.1 | 16.6% | 16.3% | (many diffs) |
| 15 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_005273279.5 | 16% | 15.7% | (many diffs) |
| 16 | human | 80342 | TRAF3IP3 | TRAF3 interacting protein 3 | XM_005273280.2 | 16% | 15.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1128
- ORF length:
- 1059
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATCAGCCCA GACCCCAGGC CCTCCCCTGG CTTGGCCCGG TGGGCTGAGA 121 GCTATGAGGC CAAGTGTGAG CGCAGGCAAG AGATCCGTGA AAGCCGCCGC TGCCGTCCCA 181 ATGTGACCAC TTGCCGCCAG GTGGGGAAGA CGCTGAGGAT CCAGCAGAGA GAGCAGCTCC 241 AGAGAGCTCG ACTGCAGCAG TTCTTCAGGA GGAGGAACCT GGAGCTAGAG GAGAAGGGCA 301 AAGCGCAGCA TCCCCAGGCC AGGGAGCAAG GGCCCTCCAG GCGGCCAGGA CAGGTGACTG 361 TCCTCAAGGA ACCCTTGTCT TGTGCCAGAA GGATTTCTTC TCCCAGAGAG CAGGTGACAG 421 GCACCAGCTC TGAAGTCTTT CCAGCCCAGC ATCCTCCTCC CTCAGGCATC TGCAGGGATC 481 TGTCTGACCA CCTCTCCTCA CAGGCTGGGG GCCTTCCTCC ACAGGACACT CCCATCAAGA 541 AGCCACCCAA ACACCACCGT GGTACTCAGA CAAAGGCAGA AGGACCAACA ATTAAGAACG 601 ATGCCAGTCA GCAAACCAAT TACGGAGTTG CAGTTCTGGA TAAGGAAATC ATCCAGCTTT 661 CTGATTACCT CAAAGAGGCC CTACAAAGGG AGCTGGTCCT AAAACAGAAA ATGGTGATTC 721 TCCAAGACCT ACTGTCCACT CTGATTCAGG CTTCTGACAG CTCTTGGAAG GGACAGCTTA 781 ATGAAGACAA ACTGAAGGGG AAACTGAGAT CCTTAGAAAA CCAGCTATAC ACCTGTACCC 841 AGAAATACTC CCCTTGGGGC ATGAAAAAAG TACTACTGGA GATGGAAGAC CAGAAAAACA 901 GCTATGAGCA GAAGGCCAAG GAGTCACTGC AGAAAGTGCT GGAGGAGAAA ATGAATGCAG 961 AGCAGCAACT ACAGAGCACA CAGCGATCCC TGGCCCTGGC AGAGCAGAAG TGTGAAGAGT 1021 GGAGGAGCCA GTATGAGGCT CTGAAGGAGG ACTGGAGGAC CCTTGGGACC CAGCACAGGG 1081 AGCTGGAGAG CCAACTCCAC GTGCTTCAGT CCAAACTGCA GATCAACTTG CCAACTTTCT 1141 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac