Construct: ORF ccsbBroadEn_12762

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015438.1_s300c1, BRDN0000388915
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STK40 (83931)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83931 STK40 serine/threonine kinase 40 NM_001282547.2 53.4% 53.3% 1_606del;1183G>A
2 human 83931 STK40 serine/threonine kinase 40 NM_032017.3 53.4% 53.3% 1_606del;1183G>A
3 human 83931 STK40 serine/threonine kinase 40 NM_001282546.2 52.8% 52.7% 1_621del;1198G>A
4 mouse 74178 Stk40 serine/threonine kinase 40 NM_028800.3 48.3% 52.1% (many diffs)
5 mouse 74178 Stk40 serine/threonine kinase 40 XM_006503442.1 48.3% 52.1% (many diffs)
6 mouse 74178 Stk40 serine/threonine kinase 40 XM_017320414.1 48.3% 52.1% (many diffs)
7 mouse 74178 Stk40 serine/threonine kinase 40 NM_001145827.1 46.8% 50.5% (many diffs)
8 mouse 74178 Stk40 serine/threonine kinase 40 XM_006503441.3 46.8% 50.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
765
ORF length:
699
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GCTCAACAAG AGGACACATC GGATAACCAT CACCAACTTC TGCCTCGGGA
121AGCATCTGGT GAGCGAGGGG GACCTGCTGA AGGACCAGAG AGGGAGCCCT GCCTACATCA
181GTCCCGACGT GCTCAGCGGC CGGCCGTACC GTGGCAAGCC CAGTGACATG TGGGCCCTGG
241GCGTGGTGCT CTTCACCATG CTGTATGGCC AGTTCCCCTT CTACGACAGC ATCCCGCAGG
301AGCTCTTCCG CAAGATCAAG GCTGCCGAGT ATACCATTCC TGAGGATGGA CGGGTTTCTG
361AGAACACCGT GTGTCTCATC CGGAAGCTGC TGGTCCTTGA CCCCCAGCAG CGCCTGGCCG
421CCGCCGACGT CCTGGAGGCC CTCAGTGCCA TCATTGCATC ATGGCAGTCC CTGTCATCTC
481TGAGTGGGCC TTTGCAAGTG GTTCCTGACA TTGATGACCA AATGAGCAAT GCGGATAGCT
541CCCAGGAGGC GAAGGTGACG GAGGAGTGCT CCCAGTACGA GTTTGAGAAC TACATGCGTC
601AGCAGCTGCT GCTGGCCGAG GAGAAGAGCT CCATCCATGA CACCCGGAGC TGGGTACCCA
661AGCGGCAGTT CGGCAGCGCA CCACCGGTGC GACGGCTGGG CCACGACGCA CAGCCCATGA
721CCTCCTTGGA CACGGCCATC CTGGCGCAGC GCTACCTGCG GAAATACCCA ACTTTCTTGT
781ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)