Construct: ORF ccsbBroadEn_12779
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007938.1_s300c1, BRDN0000395767
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRIQ1 (84125)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XR_001748890.1 | 23.8% | (many diffs) | |
| 2 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XR_944766.2 | 23.5% | (many diffs) | |
| 3 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XR_944765.2 | 22.1% | (many diffs) | |
| 4 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_011538825.2 | 21.9% | 20.9% | (many diffs) |
| 5 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_011538824.2 | 16.2% | 15.5% | (many diffs) |
| 6 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XR_944764.2 | 15.3% | (many diffs) | |
| 7 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_011538823.2 | 14.7% | 14.1% | (many diffs) |
| 8 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_024449223.1 | 14.6% | 13.9% | (many diffs) |
| 9 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_024449222.1 | 14.2% | 13.6% | (many diffs) |
| 10 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_024449221.1 | 14.2% | 13.6% | (many diffs) |
| 11 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_024449220.1 | 14.2% | 13.6% | (many diffs) |
| 12 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | NM_001079910.2 | 13.6% | 13% | (many diffs) |
| 13 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_017020019.1 | 13.6% | 13% | (many diffs) |
| 14 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_011538819.3 | 13.6% | 13% | (many diffs) |
| 15 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_011538818.2 | 13.4% | 12.8% | (many diffs) |
| 16 | human | 84125 | LRRIQ1 | leucine rich repeats and IQ... | XM_011538817.2 | 13.3% | 12.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 786
- ORF length:
- 720
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGATGATGAT GCAAAGCTCA AAGCAGAAAT AGAAGCTGAA TTGGATAAAC 121 TCAGCATTTC CTCCTTGGAA AAAGAAGACA TTGAGAGTGA TGCAAAATCA GAAACCCAGA 181 GTGATGATAG TGATACAGAT TCAGTTGAAT TACCAGAATC AGTTCTTCAC TGTATTAACA 241 TCATAAAGAA CAGGAGTAAA GCTGTTGAAG AGCTCATTCT TCAGGACCTG GAAGATATTT 301 TAAGCTGTAG TTATGGAGCA GTTTCTAATA ATCATATGCA TTTAAGAACA GGACTATCAA 361 CTGAATATGA AGAAAGTTCA GAGCAATTAA TTAAGATATT ATCTGAAATA GAAAAAGAAG 421 AATTTATGAG AAGTAAAACC GATTGTGCCA CTCCTGATTT TGTTCCTGAG CCTAGTCCTC 481 ATGACTTGCC TATGGATGAA CATGTTTTAC CAGATGATGC TGATATAAAT TTTGGATACT 541 GTGAAGTGGA AGAAAAATGT AGACAGTCTT TTGAGGCTTG GCAAGAGAAA CAGAAGGAAT 601 TAGAAGATAA AGAGAAACAA ACTCTCAAAG CTCAGAGGGA TAGAGAAGAA AAACAATTTC 661 AAGAAGAAGA AGAAAAGCGA CACTGCTGGA TGAAACAATT TAAAGTTGAA AAGAAGAAAT 721 TAGAGAACAT TCAGAAGGTA TTTTGCTTTT GTTTTTCATG TATTTTTAAA ATCAGTAGCT 781 ACCTCTGCCC AACTCTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 841 gttgcaacga ac