Construct: ORF ccsbBroadEn_12813
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004699.1_s300c1, BRDN0000388536
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCGF5 (84333)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84333 | PCGF5 | polycomb group ring finger 5 | XM_011540272.2 | 19.1% | 15.6% | (many diffs) |
| 2 | human | 84333 | PCGF5 | polycomb group ring finger 5 | XM_017016777.2 | 19.1% | 15.6% | (many diffs) |
| 3 | human | 84333 | PCGF5 | polycomb group ring finger 5 | NM_001256549.1 | 17.6% | 14.4% | (many diffs) |
| 4 | human | 84333 | PCGF5 | polycomb group ring finger 5 | NM_001257101.1 | 17.6% | 14.4% | (many diffs) |
| 5 | human | 84333 | PCGF5 | polycomb group ring finger 5 | NM_032373.5 | 17.6% | 14.4% | (many diffs) |
| 6 | human | 84333 | PCGF5 | polycomb group ring finger 5 | XM_011540271.3 | 17.6% | 14.4% | (many diffs) |
| 7 | human | 84333 | PCGF5 | polycomb group ring finger 5 | XM_017016776.2 | 17.6% | 14.4% | (many diffs) |
| 8 | human | 84333 | PCGF5 | polycomb group ring finger 5 | NR_046435.1 | 14.5% | 1_253del;401_1009del | |
| 9 | human | 84333 | PCGF5 | polycomb group ring finger 5 | NR_046310.1 | 12.5% | 1_418del;566_1174del | |
| 10 | mouse | 76073 | Pcgf5 | polycomb group ring finger 5 | NM_029508.3 | 18.2% | 15.6% | (many diffs) |
| 11 | mouse | 76073 | Pcgf5 | polycomb group ring finger 5 | XM_006527433.3 | 18.2% | 15.6% | (many diffs) |
| 12 | mouse | 76073 | Pcgf5 | polycomb group ring finger 5 | XM_011247395.2 | 18.2% | 15.6% | (many diffs) |
| 13 | mouse | 76073 | Pcgf5 | polycomb group ring finger 5 | XM_006527431.3 | 16.8% | 14.4% | (many diffs) |
| 14 | mouse | 76073 | Pcgf5 | polycomb group ring finger 5 | XM_011247391.2 | 16.8% | 14.4% | (many diffs) |
| 15 | mouse | 76073 | Pcgf5 | polycomb group ring finger 5 | XM_011247392.2 | 16.8% | 14.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 213
- ORF length:
- 147
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGTATGGC TACCCAAAGG AAACACTTGG TGAAAGATTT TAATCCTTAC ATTACCTGCT 121 ATATCTGTAA AGGGTATCTG ATCAAGCCAA CAACAGTGAC GGAATGCCTC CATACATCTG 181 CAGAATCCTA CTGGATGTCC ACTTGGATGT CCTGCCCAAC TTTCTTGTAC AAAGTtggca 241 ttataagaaa gcattgctta tcaatttgtt gcaacgaac