Construct: ORF ccsbBroadEn_12895
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009151.1_s300c1, BRDN0000397396
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC183 (84960)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84960 | CCDC183 | coiled-coil domain containi... | NM_001039374.5 | 43% | 25.6% | 1_264del;665_666delAG;957_1602del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 756
- ORF length:
- 690
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGTGGTGCGG GAGAAGCTGC GCAAGTACGT CTTCGACCGC GTGAACATGC 121 ACAACCTACT GATCCACCTG GTGCGGCGGC GCGGGCAGAA GCTGGAGAGC ATGCAGCTGG 181 AGCTGGACAG CCTGCGGAGC CAGCCCGACG CCAGCAAGGA GGAGCTGCGG CTGCTGCAGA 241 TCATCCGCCA GCTGGAGAAC AACATCGAGA AGACAATGAT CAAGATCATC ACCAGCCAGA 301 ACATCCACCT GCTGTATTTG GACCTGCTGG ATTATCTGAA GACAGTGCTG GCAGGATACC 361 CCATTGAGCT GGACAAGCTG CAGAACCTCG TGGTCAACTA CTGCTCAGAG CTGTCGGATA 421 TGAAGATCAT GTCCCAAGAT GCCATGATGA TCACGGATGA GGTCAAGGAA CATGAGGCAA 481 AGGGAGGCGT CCTTCATCGA GGAGCGCCGG GCAAGGGAGA ACCGGCTCAA CCAGCAGAAG 541 AAGCTGATCG ACAAGATCCA CACGAAGGAG ACCAGCGAGA AGTACCGCCG GGGCCAGATG 601 GACTTGGACT TCCCCTCGAA CCTGATGAGC ACGGAGACCC TGAAATTGAG GAGAAAAGAG 661 ACCTCCACAG CAGAAATGGA ATACCAGTCG GGCGTGACTG CTGTGGTGGA GAAGGTCAAG 721 AGTGCTGTAC GGTGCTCTCA CGTCTGGGAC ATCACTACCC AACTTTCTTG TACAAAGTtg 781 gcattataag aaagcattgc ttatcaattt gttgcaacga ac