Construct: ORF ccsbBroadEn_12896
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001880.1_s300c1, BRDN0000395482
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DISP1 (84976)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84976 | DISP1 | dispatched RND transporter ... | NM_001350630.2 | 71.5% | 71.5% | 1_1092del;3093A>C;3493G>A |
| 2 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_006711594.3 | 68.8% | 68.8% | 1_1239del;3240A>C;3640G>A |
| 3 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_017002612.1 | 68.8% | 68.8% | 1_1239del;3240A>C;3640G>A |
| 4 | human | 84976 | DISP1 | dispatched RND transporter ... | NM_001369594.1 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 5 | human | 84976 | DISP1 | dispatched RND transporter ... | NM_032890.5 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 6 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_006711592.2 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 7 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510072.2 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 8 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510073.2 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 9 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510074.2 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 10 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510075.2 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 11 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510077.2 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
| 12 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_017002611.1 | 60.1% | 60.1% | 1_1821del;3822A>C;4222G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2817
- ORF length:
- 2751
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT CGTCACCAGT TTTACCACTG CTGCTGCCTT TTATGCTAAC TATGTTAGCA 121 ACATTACAGC AATCCGATGC TTTGGGGTTT ATGCGGGGAC AGCTATATTG GTGAATTACG 181 TTTTGATGGT CACATGGCTT CCAGCAGTTG TTGTGCTGCA TGAGCGGTAT CTTCTTAATA 241 TATTCACTTG CTTCAAAAAG CCCCAGCAGC AAATATATGA TAACAAAAGC TGCTGGACAG 301 TGGCTTGCCA GAAGTGCCAC AAAGTACTCT TTGCCATTTC AGAAGCATCT CGAATTTTTT 361 TCGAAAAAGT ATTGCCATGC ATTGTCATTA AGTTTCGCTA CCTTTGGCTG TTTTGGTTCC 421 TTGCCTTAAC TGTAGGTGGG GCCTACATTG TATGTATAAA TCCAAAGATG AAACTGCCCT 481 CACTGGAGTT ATCCGAGTTC CAGGTGTTCC GGTCGTCCCA TCCTTTTGAG CGTTATGATG 541 CTGAATACAA AAAGCTTTTC ATGTTTGAAC GTGTTCACCA TGGCGAGGAG CTCCACATGC 601 CCATCACAGT AATCTGGGGC GTGTCCCCAG AAGACAATGG CAACCCACTA AATCCCAAGA 661 GTAAAGGGAA GTTGACATTA GATAGCAGTT TTAACATCGC CAGCCCAGCT TCCCAGGCCT 721 GGATTTTGCA CTTCTGTCAA AAACTGAGAA ACCAAACATT CTTTTACCAG ACTGATGAAC 781 AGGACTTCAC CAGCTGCTTC ATTGAGACAT TCAAACAGTG GATGGAAAAC CAGGACTGTG 841 ATGAGCCTGC CCTGTACCCA TGCTGCAGCC ACTGGAGCTT CCCCTACAAG CAAGAGATTT 901 TTGAACTGTG CATCAAGAGA GCTATCATGG AGCTGGAAAG GAGTACAGGG TACCATTTGG 961 ATAGCAAAAC CCCAGGGCCG AGGTTTGATA TCAATGATAC TATCAGGGCA GTGGTGTTAG 1021 AGTTCCAGAG TACCTACCTC TTCACACTGG CTTATGAAAA GATGCATCAG TTTTATAAAG 1081 AGGTGGACTC GTGGATATCC AGTGAGCTGA GTTCGGCCCC TGAAGGCCTC AGCAATGGTT 1141 GGTTTGTCAG CAATCTGGAG TTCTATGACC TCCAGGATAG CCTCTCCGAT GGCACCCTCA 1201 TTGCCATGGG GCTGTCAGTT GCTGTTGCAT TTAGCGTGAT GCTGCTGACA ACTTGGAACA 1261 TCATCATAAG CCTTTATGCC ATCATTTCAA TTGCTGGAAC GATATTTGTC ACTGTTGGTT 1321 CTCTTGTCCT GCTGGGCTGG GAGCTCAATG TGTTGGAATC TGTCACCATT TCGGTTGCCG 1381 TCGGCTTGTC TGTAGACTTT GCCGTCCATT ATGGGGTTGC CTACCGCTTG GCTCCAGATC 1441 CCGACCGAGA AGGCAAAGTG ATCTTCTCTC TGAGTCGCGT GGGCTCTGCG ATGGCCATGG 1501 CTGCCCTGAC CACCTTCGTG GCAGGGGCCA TGATGATGCC CTCCACAGTT CTAGCTTACA 1561 CCCAGCTGGG CACCTTCATG ATGCTCATCA TGTGTATCAG TTGGGCTTTC GCCACCTTCT 1621 TTTTCCAGTG CATGTGCCGG TGCCTTGGAC CACAGGGTAC CTGTGGTCAG ATTCCTTTAC 1681 CTAAAAAACT ACAGTGCAGT GCCTTTTCCC ATGCCTTGTC TACAAGTCCC AGTGACAAGG 1741 GACAAAGCAA AACACATACC ATAAATGCTT ATCATTTAGA TCCCAGGGGC CCAAAATCTG 1801 AACTGGAGCA TGAGTTTTAT GAATTAGAAC CTCTGGCTTC CCACAGCTGC ACTGCCCCTG 1861 AGAAGACCAC TTATGAAGAG ACCCACATCT GCTCTGAATT TTTCAACAGC CAAGCAAAGA 1921 ATTTAGGGAT GCCTGTGCAT GCAGCTTACA ACAGTGAACT CAGCAAAAGC ACTGAAAGTG 1981 ACGCTGGCTC TGCCTTGTTA CAGCCCCCTC TTGAACAGCA TACCGTGTGT CACTTCTTCT 2041 CTCTGAATCA GAGATGTAGC TGCCCCGATG CCTACAAACA CTTGAACTAT GGCCCACACT 2101 CTTGCCAGCA GATGGGGGAC TGCTTGTGCC ACCAGTGCTC TCCTACCACT AGCAGCTTTG 2161 TCCAGATCCA AAACGGCGTG GCACCTCTGA AGGCCACACA CCAAGCTGTC GAGGGCTTTG 2221 TGCACCCCAT CACGCACATC CACCACTGTC CCTGCCTGCA GGGCAGAGTA AAGCCAGCCG 2281 GAATGCAGAA TTCTCTGCCT AGGAATTTTT TCCTCCACCC AGTGCAGCAC ATTCAGGCCC 2341 AAGAAAAAAT TGGCAAGACC AATGTACACA GTCTTCAGAG GAGCATAGAA GAGCATCTTC 2401 CAAAGATGGC AGAGCCATCG TCATTTGTCT GCAGAAGCAC TGGATCGTTA CTCAAAACGT 2461 GTTGCAACCC CGAGAATAAA CAAAGGGAAC TCTGTAAAAA TAGAGACGTG AGCAATCTGG 2521 AGAGCAGTGG AGGGACTGAA AACAAGGCAG GAGGGAAAGT GGAGCTGAGC TTGTCACAGA 2581 CGGATGCAAG TGTGAACTCA GAACATTTCA ATCAGAATGA ACCAAAAGTC CTATTTAATC 2641 ATTTAATGGG GGAGGCTGGT TGTAGGTCTT GCCCAAATAA TTCACAAAGT TGTGGCAGAA 2701 TTGTGAGAGT GAAGTGCAAT TCTGTGGACT GTCAAATGCC AAACATGGAA GCCAATGTGC 2761 CTGCTGTATT AACACACTCG GAACTTTCTG GTGAAAGTTT GTTAATAAAA ACACTATACC 2821 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2881 aac