Construct: ORF ccsbBroadEn_12903
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005307.1_s300c1, BRDN0000389676
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM241 (85019)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148382.1 | 7.6% | 1_819del;1042_2899del | |
| 2 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134876.1 | 7.6% | 1_815del;1038_2900del | |
| 3 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148384.1 | 7.5% | 1_848del;1071_2928del | |
| 4 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148385.1 | 7.5% | 1_862del;1085_2942del | |
| 5 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_148383.1 | 7.4% | 1_897del;1120_2977del | |
| 6 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134875.1 | 7.4% | 1_895del;1118_2989del | |
| 7 | human | 85019 | TMEM241 | transmembrane protein 241 | NR_134877.1 | 7.4% | 1_898del;1121_2992del | |
| 8 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753289.1 | 5.5% | 1_934del;1157_3972del | |
| 9 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753290.2 | 4% | 1_801del;1024_5419del | |
| 10 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753291.1 | 4% | 1_768del;991_5467del | |
| 11 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753288.1 | 3.9% | 1_934del;1157_5552del | |
| 12 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753293.1 | 3.9% | 1_998del;1221_5616del | |
| 13 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753292.2 | 3.9% | 1_1042del;1265_5660del | |
| 14 | human | 85019 | TMEM241 | transmembrane protein 241 | XR_001753287.1 | 3.8% | 1_1074del;1297_5773del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 288
- ORF length:
- 222
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TCCTGCTCGG TGCGCTTGGA GAGGCCTTGC TGGTTTTCTC AGAGCGGAAG 121 AGCTCCTGAA CAAGACGGTC AAGAGAAAGA CTCACAGGCT GCTGCGGGAG AACAGCTTGT 181 ACACCTGTGT ACGAGCCCCT GGTCTCATAG CTCCCTGTTG GATGTGTCAG AAAGAGGAAT 241 GCAAGGACAG TGAGGCCAGG TGGGCAGTGC CATCACCCTC ACCCAAGTGC CCAACTTTCT 301 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac