Transcript: Human NR_134875.1

Homo sapiens transmembrane protein 241 (TMEM241), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
TMEM241 (85019)
Length:
2989
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_134875.1
NBCI Gene record:
TMEM241 (85019)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_134875.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428541 CATTGACCAGCAATACTTAAA pLKO_005 602 3UTR 100% 13.200 18.480 N TMEM241 n/a
2 TRCN0000431382 CACAGCTGGCTTATCAATATT pLKO_005 839 3UTR 100% 15.000 10.500 N TMEM241 n/a
3 TRCN0000435825 GTGCTGTTTGTGGGTATAATC pLKO_005 346 3UTR 100% 13.200 9.240 N TMEM241 n/a
4 TRCN0000005414 AGACGCTCATTGGTGGACTTT pLKO.1 242 3UTR 100% 4.950 3.465 N TMEM241 n/a
5 TRCN0000005413 CCGTCCTTTCTTTGCTGTCAT pLKO.1 1915 3UTR 100% 4.950 3.465 N TMEM241 n/a
6 TRCN0000005415 ACTTTGCATAATGTAGCTGAA pLKO.1 415 3UTR 100% 4.050 2.835 N TMEM241 n/a
7 TRCN0000005416 CCTGGCTTCTTACCTCACGAA pLKO.1 165 3UTR 100% 2.640 1.848 N TMEM241 n/a
8 TRCN0000005417 TGAAGTTATCATCTGTGGGTA pLKO.1 432 3UTR 100% 2.640 1.848 N TMEM241 n/a
9 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 2456 3UTR 100% 4.950 2.475 Y ORAI2 n/a
10 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 2378 3UTR 100% 4.950 2.475 Y NPHS1 n/a
11 TRCN0000149064 GCAGGTTTGTTACATAGGTAT pLKO.1 2761 3UTR 100% 4.950 2.475 Y GLIPR1L2 n/a
12 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 2453 3UTR 100% 4.950 2.475 Y LOC339059 n/a
13 TRCN0000009295 GCAGGTTTGTTACATAGGTAA pLKO.1 2761 3UTR 100% 4.950 2.475 Y OR11A1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_134875.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04470 pDONR223 100% 27.6% None 1_117del;550_551ins49;957_2989del n/a
2 ccsbBroad304_04470 pLX_304 0% 27.6% V5 1_117del;550_551ins49;957_2989del n/a
3 TRCN0000475022 CACGAGTAATAAGGAGATGGGGTT pLX_317 55.4% 27.6% V5 1_117del;550_551ins49;957_2989del n/a
4 ccsbBroadEn_12903 pDONR223 100% 7.4% None 1_895del;1118_2989del n/a
5 ccsbBroad304_12903 pLX_304 0% 7.4% V5 1_895del;1118_2989del n/a
6 TRCN0000474928 AGCTCAATAAAATGACATAATCCA pLX_317 100% 7.4% V5 1_895del;1118_2989del n/a
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