Construct: ORF ccsbBroadEn_12921
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014645.1_s300c1, BRDN0000387698
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERPINB11 (89778)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_001291279.2 | 77.9% | 77.6% | 0_1ins183;536T>C |
| 2 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_001291278.2 | 72.3% | 62% | (many diffs) |
| 3 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_001370475.1 | 70.7% | 70.4% | 1_342del;506C>T;1061T>C |
| 4 | human | 89778 | SERPINB11 | serpin family B member 11 (... | NM_080475.4 | 70.7% | 70.4% | 1_342del;506C>T;1061T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 903
- ORF length:
- 834
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCATTTCAT CAGCAATATT TAAGCTGTTC TGAGAAATGG TATCAAGCCA 121 GGTTGCAAAC TGTGGATTTT GAACAGTCTA CAGAAGAAAC GAGGAAAACG ATTAATGCTT 181 GGGTTGAAAA TAAAACTAAT GGAAAAGTCG CAAATCTCTT TGGAAAGAGC ATAATTGACC 241 CTTCATCTGT AATGGTCCTG GTGAATGCCA TATATTTCAA AGGACAATGG CAAAATAAAT 301 TTCAAGTAAG AGAGACAGTT AAAAGTCCTT TTCAGCTAAG TGAGGGTAAA AATGTAACTG 361 TGGAAATGAT GTATCAAATT GGAACATTTA AACTGGCCTT TGTAAAGGAG CCGCAGATGC 421 AAGTTCTTGA GCTGCCCTAC GTTAACAACA AATTAAGCAT GATTATTCTG CTTCCAGTAG 481 GCATAGCTAA TCTGAAACAG ATAGAAAAGC AGCTGAATTC GGGGACGTTT CATGAGTGGA 541 CAAGCTCTTC TAACATGATG GAAAGAGAAG TTGAAGTACA CCTCCCCCGA TTCAAACTTG 601 AAACTAAGTA TGAGCTAAAT TCCCTGTTAA AATCTCTAGG GGTGACAGAT CTCTTCAACC 661 AGGTCAAAGC TGATCTTTCT GGAATGTCAC CAACCAAGGG CCTATATTTA TCAAAAGCCA 721 TCCACAAGTC ATACCTGGAT GTCAGCGAAG AGGGCACGGA GGCAGCAGCA GCCACTGGGG 781 ACAGCACCGC TGTAAAAAGC CTACCAATGA GAGCTCAGTT CAAGGCGAAC CACCCCTTCC 841 TTTTCTTTAT AAGGCACACT CATACCAACA CGATCCTATT CTGTGGCAAG CTTGCCTCTC 901 CCTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 961 gcaacgaac