Construct: ORF ccsbBroadEn_12930
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006881.1_s300c1, BRDN0000392278
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM181A (90050)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90050 | FAM181A | family with sequence simila... | NM_001207071.2 | 100% | 100% | |
| 2 | human | 90050 | FAM181A | family with sequence simila... | NM_001207072.2 | 100% | 100% | |
| 3 | human | 90050 | FAM181A | family with sequence simila... | NM_001207073.2 | 100% | 100% | |
| 4 | human | 90050 | FAM181A | family with sequence simila... | NM_001207074.2 | 100% | 100% | |
| 5 | human | 90050 | FAM181A | family with sequence simila... | XM_011537297.1 | 87.9% | 87.9% | 1_120del |
| 6 | human | 90050 | FAM181A | family with sequence simila... | NM_138344.5 | 82.4% | 82.4% | 1_186del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 942
- ORF length:
- 876
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ATCCGACAGT GATGTGAAGA TGCTGCTGAA CTTCGTGAAC CTGGCGTCCA 121 GCGACATCAA GGCAGCCCTG GATAAGTCCG CACCCTGCCG CCGCTCCGTG GACCATCGCA 181 AGTACCTGCA GAAGCAGCTC AAGCGCTTCT CCCAGAAGTA TTCCCGGCTC CCGCGGGGCC 241 TTCCTGGCAG AGCTGCTGAG CCCTACCTGA AAAGGGGGTC TGAGGACCGG CCCAGGAGGC 301 TGCTCCTGGA TTTGGGCCCT GATTCCAGCC CCGGCGGGGG TGGGGGCTGC AAGGAGAAGG 361 TGCTGAGGAA CCCCTACAGG GAGGAATGTC TTGCTAAGGA GCAGCTCCCA CAGAGGCAGC 421 ATCCAGAAGC TGCCCAGCCT GGCCAGGTGC CCATGAGGAA AAGACAGCTG CCCGCTTCCT 481 TCTGGGAAGA GCCAAGGCCC ACCCACAGCT ACCATGTGGG GCTGGAGGGG GGACTGGGCC 541 CCAGGGAGGG ACCTCCCTAT GAGGGTAAGA AAAATTGCAA GGGCTTGGAG CCCCTGGGAC 601 CTGAGACTAC CCTGGTGTCC ATGTCTCCAA GGGCCCTGGC TGAAAAGGAG CCGCTCAAGA 661 TGCCTGGGGT CTCCTTGGTG GGCCGCGTCA ATGCCTGGAG TTGCTGCCCC TTCCAGTACC 721 ATGGACAGCC CATCTATCCG GGCCCCCTGG GGGCACTGCC TCAGAGTCCT GTCCCCAGCC 781 TGGGCCTTTG GAGGAAGAGC CCAGCCTTTC CCGGGGAGCT GGCGCACCTC TGCAAGGATG 841 TGGACGGCCT GGGGCAGAAG GTGTGCAGGC CCGTGGTGCT GAAACCCATC CCCACCAAGC 901 CAGCCGTGCC CCCACCCATC TTCAATGTCT TTGGCTACCT CTACCCAACT TTCTTGTACA 961 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac