Construct: ORF ccsbBroadEn_12952
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012905.1_s300c1, BRDN0000390747
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DHX57 (90957)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90957 | DHX57 | DExH-box helicase 57 | NM_001329963.1 | 42.6% | 41.4% | (many diffs) |
| 2 | human | 90957 | DHX57 | DExH-box helicase 57 | XM_024453215.1 | 42.6% | 41.4% | (many diffs) |
| 3 | human | 90957 | DHX57 | DExH-box helicase 57 | XM_011533156.3 | 40.7% | 39.7% | (many diffs) |
| 4 | human | 90957 | DHX57 | DExH-box helicase 57 | XR_002959363.1 | 39.7% | (many diffs) | |
| 5 | human | 90957 | DHX57 | DExH-box helicase 57 | NM_198963.3 | 39.4% | 38.4% | (many diffs) |
| 6 | human | 90957 | DHX57 | DExH-box helicase 57 | XM_011533154.2 | 39.4% | 38.4% | (many diffs) |
| 7 | human | 90957 | DHX57 | DExH-box helicase 57 | XM_011533155.2 | 39.4% | 38.4% | (many diffs) |
| 8 | human | 90957 | DHX57 | DExH-box helicase 57 | XR_001739030.2 | 34.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1734
- ORF length:
- 1668
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TTCTGAGAAT CAAGAGAAAG TGAAAGCTCT TCTCCGAGAC CTGCAAGAAC 121 AAGATGCTGA TGCTGGATCT GAAAGAGGCC TTTCTGGGGA GGAGGAAGAT GATGAGCCTG 181 ATTGCTGTAA CGATGAGCGG TACTGGCCAG CTGGACAGGA ACCTTCCCTC GTTCCCGACT 241 TGGATCCTTT GGAATATGCT GGCTTAGCCT CAGTGGAGCC TTATGTTCCA GAATTTACAG 301 TCTCCCCATT TGCAGTGCAA AAACTTTCCA GGTATGGTTT CAATACTGAA CGCTGTCAAG 361 CGGTCCTGAG GATGTGTGAT GGAGATGTGG GAGCATCACT AGAGCATCTC CTTACCCAGT 421 GTTTTTCAGA GACATTTGGA GAGAGGATGA AGATCTCTGA GGCAGTCAAC CAGATAAGCT 481 TGGATGAGTG TATGGAACAG CGACAGGAAG AGGCATTTGC TCTCAAGTCC ATCTGTGGAG 541 AAAAATTTAT AGAAAGAATT CAGAACAGAG TCTGGACCAT TGGGTTAGAA CTGGAGTATC 601 TGACAAGTAG ATTCCGCAAA TCCAAGCCAA AAGAAAGTAC CAAAAATGTA CAAGAGAATT 661 CACTTGAAAT CTGTAAATTT TACCTCAAAG GAAATTGTAA ATTTGGATCA AAATGCAGAT 721 TCAAACATGA AGTGCCCCCA AATCAAATTG TTGGAAGAAT AGAAAGAAGT GTAGATGATT 781 CTCATCTTAA TGCTATTGAA GATGCATCTT TTTTATATGA ACTTGAAATT CGATTTTCTA 841 AAGACCACAA ATATCCCTAC CAAGCTCCGC TCGTGGCATT TTATTCCACC AATGAGAACC 901 TACCTCTGGC TTGTCGTTTA CATATTTCTG AGTTTCTTTA TGACAAGGCC TTGACATTTG 961 CGGAAACTTC GGAACCTGTC GTATATTCTT TGATAACCCT TTTAGAGGAA GAGTCGGAAA 1021 TAGTCAAGTT ACTAACGAAT ACCCACCACA AGTATAGTGA TCCTCCTGTG AACTTTCTGC 1081 CAGTACCCTC TAGGACCAGA ATAAATAATC CTGCCTGTCA TAAAACAGTG ATTCCAAATA 1141 ATTCTTTTGT TTCTAATCAA ATTCCAGAAG TTGAAAAAGC ATCAGAATCT GAGGAGTCAG 1201 ATGAGGATGA CGGTCCTGCA CCTGTTATAG TAGAGAATGA AAGCTATGTG AACCTTAAGA 1261 AAAAGATTTC CAAAAGATAT GACTGGCAGG CAAAGTCAGT ACATGCTGAA AATGGTAAAA 1321 TCTGCAAGCA GTTCCGAATG AAACAGGCTT CCAGACAGTT CCAGTCCATT CTGCAAGAGA 1381 GGCAATCACT CCCTGCTTGG GAAGAAAGAG AAACCATTCT TAACTTATTG CGTAAGCACC 1441 AGGTGGTTGT CATAAGTGGT ATGACTGGAT GTGGGAAAAC CACACAAATT CCGCAGTTTA 1501 TTCTGGATGA TTCTCTGAGT GGACCACCTG AGAAGGTAGC CAACATCATC TGTACCCAAC 1561 CCCGACGAAT CTCTGCAATC TCTGTTGCTG AACGCGTTGC TAAAGAAAGA GCAGAGAGGG 1621 TGGGTCTGAC CGTGGGATAC CAGATTCGGT TAGAAAGTGT CAAGGTTTGT ATGCTCTGCT 1681 TATTTCCTGG TAACAGAAAT TTATGGTTTT TAGGTATAAA AAGTTTTGGG GGTTACCCAA 1741 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac