Construct: ORF ccsbBroadEn_12976

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007980.1_s300c1, BRDN0000387346
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBTD2 (92181)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92181 UBTD2 ubiquitin domain containing 2 XM_017010022.1 100% 100%
2 human 92181 UBTD2 ubiquitin domain containing 2 XM_017010023.1 100% 100%
3 human 92181 UBTD2 ubiquitin domain containing 2 NM_152277.3 81.1% 81.1% 1_132del
4 mouse 327900 Ubtd2 ubiquitin domain containing 2 NM_173784.3 72.3% 78.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
636
ORF length:
570
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AGATGGACAA CTACGCAGCA AGAGGGATGA ATTTTGGGAT ACAGCACCAG
121CTTTTGAAGG CCGGAAAGAG ATTTGGGATG CCTTGAAGGC TGCTGCACAT GCTTTTGAGA
181GCAATGATCA TGAACTGGCA CAAGCAATCA TTGATGGTGC AAACATAACA TTACCACATG
241GTGCACTTAC AGAGTGCTAC GATGAACTGG GGAACAGATA TCAGCTTCCA GTGTATTGCT
301TGGCACCGCC AATCAACATG ATAGAGGAAA AGAGCGACAT AGAGACTCTG GATATTCCTG
361AGCCACCACC CAATTCTGGA TATGAATGTC AGCTTCGTTT GCGCCTTTCC ACAGGCAAAG
421ACCTCAAGCT TGTGGTTCGC AGCACAGACA CAGTATTCCA CATGAAGAGA CGGTTGCATG
481CAGCAGAGGG AGTGGAACCA GGTAGTCAGC GGTGGTTTTT TTCTGGCAGA CCTCTCACTG
541ACAAAATGAA GTTCGAAGAG CTGAAGATCC CAAAGGACTA TGTTGTACAG GTTATAGTGA
601GCCAACCTGT GCAGAACCCA ACACCAGTGG AGAACTGCCC AACTTTCTTG TACAAAGTtg
661gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)