Construct: ORF ccsbBroadEn_12978
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001778.1_s300c1, BRDN0000387471
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GLYATL1 (92292)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | NM_001220494.3 | 100% | 100% | |
| 2 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | NM_001220496.2 | 100% | 100% | |
| 3 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | NM_001354699.1 | 100% | 100% | |
| 4 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_024448769.1 | 100% | 100% | |
| 5 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_011545354.2 | 89.4% | 84.5% | (many diffs) |
| 6 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_011545355.2 | 89.4% | 84.5% | (many diffs) |
| 7 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_011545356.2 | 89.4% | 84.5% | (many diffs) |
| 8 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_011545357.2 | 89.4% | 84.5% | (many diffs) |
| 9 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_011545358.3 | 89.4% | 84.5% | (many diffs) |
| 10 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | XM_011545359.2 | 89.4% | 84.5% | (many diffs) |
| 11 | human | 100287520 | GLYATL1B | glycine-N-acyltransferase l... | NM_001355566.1 | 88.9% | 82.4% | (many diffs) |
| 12 | human | 92292 | GLYATL1 | glycine-N-acyltransferase l... | NM_080661.4 | 87.1% | 82.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 972
- ORF length:
- 906
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT CCTACTGAAT AACTCCCATA AGCTGCTGGC CCTATACAAA TCCTTGGCCA 121 GGAGCATCCC TGAGTCCCTG AAGGTGTATG GCTCTGTGTA TCACATCAAT CACGGGAACC 181 CCTTCAACAT GGAGGTGCTG GTGGATTCCT GGCCTGAATA TCAGATGGTT ATTATCCGGC 241 CTCAAAAGCA GGAGATGACT GATGACATGG ATTCATACAC AAACGTATAT CGTATGTTCT 301 CCAAAGAGCC TCAAAAATCA GAAGAAGTTT TGAAAAATTG TGAGATCGTA AACTGGAAAC 361 AGAGACTCCA AATCCAAGGT CTTCAAGAAA GTTTAGGTGA GGGGATAAGA GTGGCTACAT 421 TTTCAAAGTC AGTGAAAGTA GAGCATTCGA GAGCACTCCT CTTGGTTACG GAAGATATTC 481 TGAAGCTCAA TGCCTCCAGT AAAAGCAAGC TTGGAAGCTG GGCTGAGACA GGCCACCCAG 541 ATGATGAATT TGAAAGTGAA ACTCCCAACT TTAAGTATGC CCAGCTGGAT GTCTCTTATT 601 CTGGGCTGGT AAATGACAAC TGGAAGCGAG GGAAGAATGA GAGGAGCCTG CATTACATCA 661 AGCGCTGCAT AGAAGACCTG CCAGCAGCCT GTATGCTCGG CCCAGAGGGA GTCCCGGTCT 721 CATGGGTAAC CATGGACCCT TCTTGTGAAG TAGGAATGGC CTACAGCATG GAAAAATACC 781 GAAGGACAGG CAACATGGCA CGAGTGATGG TGCGATACAT GAAATATCTG CGTCAGAAGA 841 ATATTCCATT TTACATCTCT GTGTTGGAAG AAAATGAAGA CTCCCGCAGA TTTGTGGGGC 901 AGTTTGGTTT CTTTGAGGCC TCCTGTGAGT GGCACCAATG GACTTGCTAC CCACAGAATC 961 TAGTTCCATT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1021 caatttgttg caacgaac