Construct: ORF ccsbBroadEn_12983
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002466.1_s300c1, BRDN0000390594
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPLL (92906)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92906 | HNRNPLL | heterogeneous nuclear ribon... | NM_001142650.1 | 50.8% | 49.1% | (many diffs) |
| 2 | human | 92906 | HNRNPLL | heterogeneous nuclear ribon... | NM_138394.4 | 50.2% | 48.1% | (many diffs) |
| 3 | human | 92906 | HNRNPLL | heterogeneous nuclear ribon... | XM_011533166.3 | 47.7% | 45.7% | (many diffs) |
| 4 | human | 92906 | HNRNPLL | heterogeneous nuclear ribon... | XM_011533165.3 | 47.3% | 46.2% | (many diffs) |
| 5 | human | 92906 | HNRNPLL | heterogeneous nuclear ribon... | XM_005264640.3 | 46.2% | 44.7% | (many diffs) |
| 6 | human | 92906 | HNRNPLL | heterogeneous nuclear ribon... | XM_005264639.4 | 45.7% | 43.8% | (many diffs) |
| 7 | mouse | 72692 | Hnrnpll | heterogeneous nuclear ribon... | NM_144802.4 | 42.4% | 41.9% | (many diffs) |
| 8 | mouse | 72692 | Hnrnpll | heterogeneous nuclear ribon... | XR_001782118.1 | 22.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 891
- ORF length:
- 825
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GGCTCGGGAG ACGTACGAGG AGGACCGGGA GTACGAGAGC CAGGCCAAGC 121 GTCTCAAGAC CGAGGAGGGG GAGATCGACT ACTCGGCCGA GGAAGGCGAG AACCGCCGGG 181 AAGCGACGCC CCGGGGCGGG GGCGATGGCG GCGGCGGCGG CCGGAGCTTC TCTCAGCCGG 241 AGGCAGGTGG AAGTCATCAT AAAGTTTCTG TTTCACCCGT CGTCCATGTT CGAGGACTCT 301 GTGAATCTGT GGTGGAAGCA GACCTCGTGG AAGCGCTGGA AAAATTTGGG ACAATATGCT 361 ATGTGATGAT GATGCCATTT AAACGACAGG CTCTAGTGGA ATTTGAAAAC ATAGATAGTG 421 CCAAAGAATG TGTGACATTT GCTGCAGATG AACCCGTGTA CATTGCTGGT CAACAGGCTT 481 TTTTCAACTA TTCTACAAGC AAAAGGATCA CTCGGCCAGG AAATACTGAT GATCCATCAG 541 GAGGCAACAA AGTTCTTCTG CTCTCAATTC AGAATCCGCT TTATCCAATT ACAGTGGATG 601 TTTTATATAC TGTATGCAAC CCTGTTGGCA AAGTGCAACG TATTGTTATA TTCAAGAGAA 661 ATGGGATACA AGCAATGGTT GAGTTTGAAT CAGTCCTTTG TGCCCAGAAA GCTAAAGCAG 721 CACTCAATGG AGCTGATATA TATGCTGGAT GTTGCACACT AAAAATTGAA TATGCACGGC 781 CAACTCGTCT AAATGTTATT AGGAATGACA ATGACAGTTG GGACTACACT AAACCATATT 841 TGGGAAGACG AGGTAGGTAT TTTATACATT TTAGAATGTA CTTGATCTGC TGCCCAACTT 901 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac