Construct: ORF ccsbBroadEn_12991

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013717.1_s300c1, BRDN0000385526
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM44 (93109)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93109 TMEM44 transmembrane protein 44 XM_005269371.4 38.9% 38.9% 1_804del
2 human 93109 TMEM44 transmembrane protein 44 NM_138399.5 38.7% 38.7% 1_804del;1174_1175insAGC
3 human 93109 TMEM44 transmembrane protein 44 XM_017007517.1 38.6% 38.6% 1_813del
4 human 93109 TMEM44 transmembrane protein 44 XM_011513322.2 37.3% 37.3% 1_804del;911_967del
5 human 93109 TMEM44 transmembrane protein 44 XM_011513321.2 37% 37% 1_813del;920_976del
6 human 93109 TMEM44 transmembrane protein 44 XM_011513319.2 36.5% 36.5% 1_834del;941_997del
7 human 93109 TMEM44 transmembrane protein 44 NM_001011655.3 36.4% 36.4% 1_804del;1174_1175ins33
8 human 93109 TMEM44 transmembrane protein 44 XM_017007518.1 36.1% 36.1% 1_813del;1183_1184ins33
9 human 93109 TMEM44 transmembrane protein 44 XM_011513320.2 33.8% 33.8% 1_945del;1052_1108del
10 human 93109 TMEM44 transmembrane protein 44 NM_001166305.2 32.9% 32.9% 1_945del;1315_1316ins33
11 human 93109 TMEM44 transmembrane protein 44 XM_011513318.2 32.7% 32.7% 1_954del;1324_1325ins33
12 human 93109 TMEM44 transmembrane protein 44 NM_001166306.2 29.1% 18.2% (many diffs)
13 mouse 224090 Tmem44 transmembrane protein 44 XM_006522063.3 22.2% 21.1% (many diffs)
14 mouse 224090 Tmem44 transmembrane protein 44 XM_006522064.3 22% 20.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
579
ORF length:
513
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GAGCAAGATG AGACAGGCCT TAGGATTTGC CAAGGAAGCC AGAGAGAGCC
121CTGACACCCA AGCCCTTTTG ACCTGTGCAG AGAAAGAGGA AGAAAACCAG GAGAATTTGG
181ATTGGGTGCC TCTCACCACA CTGTCACACT GCAAGTCACT GAGGACAATG ACAGCAATCA
241GTCGCTACAT GGAGCTGACC ATCGAGCCTG TGCAGCAGGC AGGCTGCAGT GCCACCAGGC
301TGCCAGGTGA CGGGCAGACG AGCGCCGGAG ATGCGTCCCT GCAGGACCCC CCGTCGTACC
361CTCCCGTTCA GGTCATCCGG GCCCGGGTGT CTTCCGGCAG CTCCTCTGAG GTCTCCTCCA
421TCAACTCCGA CCTGGAGCAG AAGTATTGGG AGGCCCTAAA CTCGGAGCAG TGGGACCCTG
481AAGATGTGAA CCTCGAAGGC AGCAAAGAAA ATGTGGAGCT ACTGGGATCC CAGGTGCACC
541AGGACTCTGT GAGGACAGCA CACCTGAGTG ATGATGATTA CCCAACTTTC TTGTACAAAG
601Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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