Construct: ORF ccsbBroadEn_12992

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004546.1_s300c1, BRDN0000389563
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF561 (93134)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93134 ZNF561 zinc finger protein 561 NM_001330365.2 100% 100%
2 human 93134 ZNF561 zinc finger protein 561 XM_017027479.2 100% 100%
3 human 93134 ZNF561 zinc finger protein 561 XM_017027481.1 100% 100%
4 human 93134 ZNF561 zinc finger protein 561 XM_024451781.1 100% 100%
5 human 93134 ZNF561 zinc finger protein 561 XM_011528436.2 90.8% 90.8% 1_126del
6 human 93134 ZNF561 zinc finger protein 561 XM_011528437.2 90.8% 90.8% 1_126del
7 human 93134 ZNF561 zinc finger protein 561 XM_017027478.1 90.8% 90.8% 1_126del
8 human 93134 ZNF561 zinc finger protein 561 NM_152289.3 85.8% 85.8% 1_207del
9 human 93134 ZNF561 zinc finger protein 561 XM_005260150.2 85.8% 85.8% 1_207del
10 human 93134 ZNF561 zinc finger protein 561 XM_006722938.3 84.7% 84.7% 1_225del
11 human 93134 ZNF561 zinc finger protein 561 XM_011528434.2 84.7% 84.7% 1_225del
12 human 93134 ZNF561 zinc finger protein 561 XM_017027482.1 83.9% 83.9% 0_1ins201
13 human 93134 ZNF561 zinc finger protein 561 XM_024451780.1 83% 83% 1_255del
14 human 54811 ZNF562 zinc finger protein 562 XM_011528100.3 76.7% 71.8% (many diffs)
15 human 54811 ZNF562 zinc finger protein 562 NM_017656.4 74.6% 69.9% (many diffs)
16 human 54811 ZNF562 zinc finger protein 562 XM_005259944.4 71.3% 66.8% (many diffs)
17 human 54811 ZNF562 zinc finger protein 562 XM_011528102.3 69.5% 64.2% (many diffs)
18 human 54811 ZNF562 zinc finger protein 562 XM_005259951.4 69.3% 64.5% (many diffs)
19 human 54811 ZNF562 zinc finger protein 562 NM_001300885.2 66.1% 61.9% (many diffs)
20 human 54811 ZNF562 zinc finger protein 562 XM_017026898.2 66.1% 61.9% (many diffs)
21 human 54811 ZNF562 zinc finger protein 562 NM_001130031.2 66% 61.8% (many diffs)
22 human 54811 ZNF562 zinc finger protein 562 NM_001130032.2 66% 61.8% (many diffs)
23 human 54811 ZNF562 zinc finger protein 562 XM_005259941.4 66% 61.8% (many diffs)
24 human 54811 ZNF562 zinc finger protein 562 XM_005259952.4 63% 58.7% (many diffs)
25 human 54811 ZNF562 zinc finger protein 562 XM_017026899.2 63% 58.7% (many diffs)
26 human 729648 ZNF812P zinc finger protein 812, ps... NR_146446.1 39.4% (many diffs)
27 human 729648 ZNF812P zinc finger protein 812, ps... NR_146445.1 37.2% (many diffs)
28 human 729648 ZNF812P zinc finger protein 812, ps... NR_146444.1 36.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1317
ORF length:
1251
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GGAGAACTAC ATGAACCTGG CCTCTGTGGA ATGGGAAATA CAACCTAGAA
121CCAAACGGTC ATCACTTCAG CAGGGTTTTT TGAAGAATCA AATATTCAGT GGGATACAAA
181TGACAAGAGG CTACAGTGGA TGGAAACTCT GTGACTGTAA GAATTGTGGA GAGGTCTTCA
241GGGAACAGTT TTGCCTTAAG ACACACATGA GAGTTCAGAA TGGAGGGAAT ACTTCTGAGG
301GTAATTGTTA TGGAAAAGAC ACCCTCAGTG TGCACAAGGA AGCCTCTACT GGACAGGAAC
361TTTCCAAATT TAATCCATGT GGAAAAGTCT TTACTCTAAC TCCAGGTCTT GCTGTACATC
421TTGAAGTTCT CAATGCAAGA CAACCCTACA AATGTAAGGA ATGTGGAAAA GGCTTTAAGT
481ATTTTGCAAG CCTTGATAAT CATATGGGAA TCCACACTGA TGAGAAACTC TGTGAATTTC
541AGGAATATGG GAGAGCTGTC ACAGCTTCTT CACACCTAAA GCAGTGTGTA GCAGTTCATA
601CAGGAAAGAA ATCCAAAAAG ACTAAGAAAT GTGGGAAATC CTTCACTAAT TTTTCTCAAC
661TTTATGCACC TGTGAAAACT CATAAAGGAG AGAAGTCCTT TGAATGTAAA GAATGTGGAA
721GATCCTTTAG AAATTCCTCA TGCCTTAATG ATCACATTCA AATTCACACT GGAATAAAAC
781CACACAAGTG TACTTACTGT GGGAAAGCCT TCACTAGATC AACTCAACTT ACTGAACATG
841TAAGAACTCA CACTGGAATA AAACCCTATG AATGTAAGGA ATGTGGCCAA GCCTTTGCTC
901AGTACTCGGG CCTTTCTATA CACATACGAA GTCACAGTGG AAAGAAACCC TATCAGTGTA
961AGGAATGTGG GAAAGCCTTC ACTACATCCA CAAGTCTTAT TCAGCATACA AGAATTCACA
1021CAGGAGAGAA GCCTTATGAA TGTGTTGAAT GTGGGAAGAC CTTCATTACT TCTTCCCGTC
1081GTAGTAAACA TTTGAAAACT CATAGTGGAG AAAAGCCCTT TGTATGCAAG ATATGTGGGA
1141AAGCATTTCT ATATTCCTCA CGCCTTAATG TTCACCTGCG AACTCATACC GGAGAGAAAC
1201CCTTCGTATG TAAAGAATGT GGGAAAGCAT TTGCTGTTTC CTCACGCCTA AGTAGACATG
1261AAAGAATTCA CACTGGGGAG AAACCCTATG AATGCAAGGA TATGAGTGTT ACCATTTACC
1321CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1381aac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.