Construct: ORF ccsbBroadEn_12992
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004546.1_s300c1, BRDN0000389563
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF561 (93134)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93134 | ZNF561 | zinc finger protein 561 | NM_001330365.2 | 100% | 100% | |
| 2 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027479.2 | 100% | 100% | |
| 3 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027481.1 | 100% | 100% | |
| 4 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_024451781.1 | 100% | 100% | |
| 5 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_011528436.2 | 90.8% | 90.8% | 1_126del |
| 6 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_011528437.2 | 90.8% | 90.8% | 1_126del |
| 7 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027478.1 | 90.8% | 90.8% | 1_126del |
| 8 | human | 93134 | ZNF561 | zinc finger protein 561 | NM_152289.3 | 85.8% | 85.8% | 1_207del |
| 9 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_005260150.2 | 85.8% | 85.8% | 1_207del |
| 10 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_006722938.3 | 84.7% | 84.7% | 1_225del |
| 11 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_011528434.2 | 84.7% | 84.7% | 1_225del |
| 12 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027482.1 | 83.9% | 83.9% | 0_1ins201 |
| 13 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_024451780.1 | 83% | 83% | 1_255del |
| 14 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_011528100.3 | 76.7% | 71.8% | (many diffs) |
| 15 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_017656.4 | 74.6% | 69.9% | (many diffs) |
| 16 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259944.4 | 71.3% | 66.8% | (many diffs) |
| 17 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_011528102.3 | 69.5% | 64.2% | (many diffs) |
| 18 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259951.4 | 69.3% | 64.5% | (many diffs) |
| 19 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_001300885.2 | 66.1% | 61.9% | (many diffs) |
| 20 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_017026898.2 | 66.1% | 61.9% | (many diffs) |
| 21 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_001130031.2 | 66% | 61.8% | (many diffs) |
| 22 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_001130032.2 | 66% | 61.8% | (many diffs) |
| 23 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259941.4 | 66% | 61.8% | (many diffs) |
| 24 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259952.4 | 63% | 58.7% | (many diffs) |
| 25 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_017026899.2 | 63% | 58.7% | (many diffs) |
| 26 | human | 729648 | ZNF812P | zinc finger protein 812, ps... | NR_146446.1 | 39.4% | (many diffs) | |
| 27 | human | 729648 | ZNF812P | zinc finger protein 812, ps... | NR_146445.1 | 37.2% | (many diffs) | |
| 28 | human | 729648 | ZNF812P | zinc finger protein 812, ps... | NR_146444.1 | 36.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1317
- ORF length:
- 1251
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GGAGAACTAC ATGAACCTGG CCTCTGTGGA ATGGGAAATA CAACCTAGAA 121 CCAAACGGTC ATCACTTCAG CAGGGTTTTT TGAAGAATCA AATATTCAGT GGGATACAAA 181 TGACAAGAGG CTACAGTGGA TGGAAACTCT GTGACTGTAA GAATTGTGGA GAGGTCTTCA 241 GGGAACAGTT TTGCCTTAAG ACACACATGA GAGTTCAGAA TGGAGGGAAT ACTTCTGAGG 301 GTAATTGTTA TGGAAAAGAC ACCCTCAGTG TGCACAAGGA AGCCTCTACT GGACAGGAAC 361 TTTCCAAATT TAATCCATGT GGAAAAGTCT TTACTCTAAC TCCAGGTCTT GCTGTACATC 421 TTGAAGTTCT CAATGCAAGA CAACCCTACA AATGTAAGGA ATGTGGAAAA GGCTTTAAGT 481 ATTTTGCAAG CCTTGATAAT CATATGGGAA TCCACACTGA TGAGAAACTC TGTGAATTTC 541 AGGAATATGG GAGAGCTGTC ACAGCTTCTT CACACCTAAA GCAGTGTGTA GCAGTTCATA 601 CAGGAAAGAA ATCCAAAAAG ACTAAGAAAT GTGGGAAATC CTTCACTAAT TTTTCTCAAC 661 TTTATGCACC TGTGAAAACT CATAAAGGAG AGAAGTCCTT TGAATGTAAA GAATGTGGAA 721 GATCCTTTAG AAATTCCTCA TGCCTTAATG ATCACATTCA AATTCACACT GGAATAAAAC 781 CACACAAGTG TACTTACTGT GGGAAAGCCT TCACTAGATC AACTCAACTT ACTGAACATG 841 TAAGAACTCA CACTGGAATA AAACCCTATG AATGTAAGGA ATGTGGCCAA GCCTTTGCTC 901 AGTACTCGGG CCTTTCTATA CACATACGAA GTCACAGTGG AAAGAAACCC TATCAGTGTA 961 AGGAATGTGG GAAAGCCTTC ACTACATCCA CAAGTCTTAT TCAGCATACA AGAATTCACA 1021 CAGGAGAGAA GCCTTATGAA TGTGTTGAAT GTGGGAAGAC CTTCATTACT TCTTCCCGTC 1081 GTAGTAAACA TTTGAAAACT CATAGTGGAG AAAAGCCCTT TGTATGCAAG ATATGTGGGA 1141 AAGCATTTCT ATATTCCTCA CGCCTTAATG TTCACCTGCG AACTCATACC GGAGAGAAAC 1201 CCTTCGTATG TAAAGAATGT GGGAAAGCAT TTGCTGTTTC CTCACGCCTA AGTAGACATG 1261 AAAGAATTCA CACTGGGGAG AAACCCTATG AATGCAAGGA TATGAGTGTT ACCATTTACC 1321 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1381 aac