Construct: ORF ccsbBroadEn_13051
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017083.1_s300c1, BRDN0000393871
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC5A11 (115584)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001258413.3 | 99.8% | 99.8% | 885C>T;1163A>G |
| 2 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352236.2 | 99.8% | 99.8% | 885C>T;1163A>G |
| 3 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352249.2 | 99.8% | 99.8% | 885C>T;1163A>G |
| 4 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352259.2 | 99.8% | 99.8% | 885C>T;1163A>G |
| 5 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352237.2 | 94.1% | 94.1% | 179_180ins105;780C>T;1058A>G |
| 6 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352235.2 | 92.1% | 92.1% | 1_153del;1038C>T;1316A>G |
| 7 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352242.2 | 90.4% | 90.3% | 1_192del;1077C>T;1355A>G |
| 8 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352248.2 | 90.4% | 90.3% | 1_192del;1077C>T;1355A>G |
| 9 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_052944.4 | 90.4% | 90.3% | 1_192del;1077C>T;1355A>G |
| 10 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | XM_017022903.1 | 90.4% | 90.3% | 1_192del;1077C>T;1355A>G |
| 11 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001258412.2 | 86.9% | 80% | (many diffs) |
| 12 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | XM_011545725.2 | 86.9% | 86.8% | (many diffs) |
| 13 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352250.2 | 86.4% | 86.3% | (many diffs) |
| 14 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001258411.2 | 85.2% | 85.1% | (many diffs) |
| 15 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352238.2 | 85.2% | 85.1% | (many diffs) |
| 16 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001258414.1 | 84.8% | 75.1% | (many diffs) |
| 17 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | XM_005255082.4 | 84% | 83.9% | 0_1ins291;594C>T;872A>G |
| 18 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | XM_024450145.1 | 84% | 83.9% | 0_1ins291;594C>T;872A>G |
| 19 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147936.2 | 78.6% | (many diffs) | |
| 20 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352245.2 | 76.7% | 68% | (many diffs) |
| 21 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352246.2 | 76.7% | 68% | (many diffs) |
| 22 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147940.2 | 75% | (many diffs) | |
| 23 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147934.2 | 73.4% | (many diffs) | |
| 24 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NM_001352247.2 | 71.6% | 62.8% | (many diffs) |
| 25 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147935.2 | 71.2% | (many diffs) | |
| 26 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147933.2 | 69% | (many diffs) | |
| 27 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | XM_024450146.1 | 68.9% | 59.2% | (many diffs) |
| 28 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147938.2 | 67.3% | (many diffs) | |
| 29 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | NR_147939.2 | 66.8% | (many diffs) | |
| 30 | human | 115584 | SLC5A11 | solute carrier family 5 mem... | XM_011545728.1 | 59.6% | 59.5% | 0_1ins738;147C>T;425A>G |
| 31 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | XM_011241769.1 | 79% | 80% | (many diffs) |
| 32 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | NM_146198.2 | 76.7% | 78% | (many diffs) |
| 33 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | XM_006507712.3 | 76.7% | 78% | (many diffs) |
| 34 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | XM_011241766.2 | 76.7% | 78% | (many diffs) |
| 35 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | XM_011241767.2 | 76.7% | 78% | (many diffs) |
| 36 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | XM_011241768.2 | 76.7% | 78% | (many diffs) |
| 37 | mouse | 233836 | Slc5a11 | solute carrier family 5 (so... | XR_001785540.1 | 56.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1899
- ORF length:
- 1833
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GTGGTGGCCA GTGGGTGCAT CCTTGTTTGC CAGCAATGTT GGAAGTGGAC 121 ATTTCATTGG CCTGGCAGGG TCAGGTGCTG CTACGGGCAT TTCTGTATCA GCTTATGAAC 181 TTAATGGCTT GTTTTCTGTG CTGATGTTGG CCTGGATCTT CCTACCCATC TACATTGCTG 241 GTCAGGTCAC CACGATGCCA GAATACCTAC GGAAGCGCTT CGGTGGCATC AGAATCCCCA 301 TCATCCTGGC TGTACTCTAC CTATTTATCT ACATCTTCAC CAAGATCTCG GTAGACATGT 361 ATGCAGGTGC CATCTTCATC CAGCAGTCTT TGCACCTGGA TCTGTACCTG GCCATAGTTG 421 GGCTACTGGC CATCACTGCT GTATACACGG TTGCTGGTGG CCTGGCTGCT GTGATCTACA 481 CGGATGCCCT GCAGACGCTG ATCATGCTTA TAGGAGCGCT CACCTTGATG GGCTACAGTT 541 TCGCCGCGGT TGGTGGGATG GAAGGACTGA AGGAGAAGTA CTTCTTGGCC CTGGCTAGCA 601 ACCGGAGTGA GAACAGCAGC TGCGGGCTGC CCCGGGAAGA TGCCTTCCAT ATTTTCCGAG 661 ATCCGCTGAC ATCTGATCTC CCGTGGCCGG GGGTCCTATT TGGAATGTCC ATCCCATCCC 721 TCTGGTACTG GTGCACGGAT CAGGTGATTG TCCAGCGGAC TCTGGCTGCC AAGAACCTGT 781 CCCATGCCAA AGGAGGTGCT CTGATGGCTG CATACCTGAA GGTGCTGCCC CTCTTCATAA 841 TGGTGTTCCC TGGGATGGTC AGCCGCATCC TCTTCCCAGA TCAAGTGGCC TGTGCAGATC 901 CAGAGATCTG CCAGAAGATC TGCAGCAACC CCTCAGGCTG TTCGGACATT GCGTATCCCA 961 AACTCGTGCT GGAACTCCTG CCCACAGGGC TCCGTGGGCT GATGATGGCT GTGATGGTGG 1021 CGGCTCTCAT GTCCTCCCTC ACCTCCATCT TTAACAGTGC CAGCACCATC TTCACCATGG 1081 ACCTCTGGAA TCACCTCCGG CCTCGGGCAT CTGAGAAGGA GCTCATGATT GTGGGCAGGG 1141 TGTTTGTGCT GCTGCTGGTC CTGGTCTCCA TCCTCTGGAT CCCTGTGGTC CAGGCCAGCC 1201 AGGGCGGCCA GCTCTTCATC TATATCCGGT CCATCAGCTC CTACCTGCAG CCGCCTGTGG 1261 CGGTGGTCTT CATCATGGGA TGTTTCTGGA AGAGGACCAA TGAAAAGGGT GCCTTCTGGG 1321 GCCTGATCTC GGGCCTGCTC CTGGGCTTGG TTAGGCTGGT CCTGGACTTT ATTTACGTGC 1381 AGCCTCGATG CGACCAGCCA GATGAGCGCC CGGTCCTGGT GAAGAGCATT CACTACCTCT 1441 ACTTCTCCAT GATCCTGTCC ACGGTCACCC TCATCACTGT CTCCACCGTG AGCTGGTTCA 1501 CAGAGCCACC CTCCAAGGAG ATGGTCAGCC ACCTGACCTG GTTTACTCGT CACGACCCCG 1561 TGGTCCAGAA GGAACAAGCA CCACCAGCAG CTCCCTTGTC TCTTACCCTC TCTCAGAACG 1621 GGATGCCAGA GGCCAGCAGC AGCAGCAGCG TCCAGTTCGA GATGGTTCAA GAAAACACGT 1681 CTAAAACCCA CAGCTGTGAC ATGACCCCAA AGCAGTCCAA AGTGGTGAAG GCCATCCTGT 1741 GGCTCTGTGG AATACAGGAG AAGGGCAAGG AAGAGCTCCC GGCCAGAGCA GAAGCCATCA 1801 TAGTTTCCCT GGAAGAAAAC CCCTTGGTGA AGACCCTCCT GGACGTCAAC CTCATTTTCT 1861 GCGTGAGCTG CGCCATCTTT ATCTGGGGCT ATTTTGCTTA CCCAACTTTC TTGTACAAAG 1921 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac