Construct: ORF ccsbBroadEn_13053
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014324.1_s300c1, BRDN0000456960
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTC6 (319089)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 319089 | TTC6 | tetratricopeptide repeat do... | NM_001368142.1 | 64.5% | 61.7% | (many diffs) |
| 2 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XM_011537431.2 | 37.8% | 36.3% | (many diffs) |
| 3 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XM_011537430.2 | 35% | 33.7% | (many diffs) |
| 4 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XM_017021256.1 | 31.8% | 30.5% | (many diffs) |
| 5 | human | 319089 | TTC6 | tetratricopeptide repeat do... | NM_001310135.2 | 26.4% | 25.4% | (many diffs) |
| 6 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XM_024449560.1 | 26.3% | 25.2% | (many diffs) |
| 7 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XM_017021254.1 | 23.8% | 22.7% | (many diffs) |
| 8 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XR_943762.2 | 23.1% | 1_4763del;4856C>T;6372_6951del | |
| 9 | human | 319089 | TTC6 | tetratricopeptide repeat do... | XM_017021255.1 | 21.5% | 20.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1677
- ORF length:
- 1608
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACAAAGGT CTCAGTGAGT TGAGTCCTAT GCAGCAAGCC CTTATTTATT 121 CATTTTGTGA AAACCATGAC AAGGCCATTG AGGTCTTGGA TGGAATCAGC TGGAATAGAG 181 CTGAGATGAC CATGTGTGCT CTATTAGCAA AAGTTCAAAT GAAGGCCAAG AGAACCAAGG 241 AAGCTGTGGA AGTGCTTAAG AAGGCTTTGG ATGCCATTTC TCATTCTGAT AAAGGACCAG 301 ATGCCACAGC AATTTCAGCA GACTGTCTGT ATAACTTGGG TCTTTGTTAC ATGGAGGAAG 361 GCAATTTACA AATGGCTTTT GATTCTTTTA CAAAAGCTGT GAAAGCAAAT CCAGATTTTG 421 CAGAAAGCTT TTATCAGCGA GGGCTTTGTA AAGTGAAACT CCACAAGGAT AGCTCGATTC 481 TGGATTTTAA TCGTGCAATT ACCCTCAATC CAAAACATTA CCAGGCATAT TTAAGCCGAG 541 TAGCATTCTA TGGTTTAAAA GGCAGGTATT CCAAAGCAAT CTTGAATTGT AACAAGGCTA 601 TTAAAATTTA CCCTGAAAGC GTACGTGCCT ATCTCTACAG AGGAGTTCTG AAATACTACA 661 ACAAGACTTA TAAGCTAGCA ATTACAGATT TAACTACAGC TATCAGCATG GACAAAAATA 721 GTTATACAGC ATTTTATAAC AGAGCATTAT GTTACACCAA GATAAGGGAA CTTCAAATGG 781 CATTAACAGA TTATGGAATT GTGCTGCTTC TTGATGCTAC AGAAACTGTA AAACTAAATA 841 CCTTCCTTAA TCGTGGACTC ATCTACGTAG AACTAGGCCA GTATGGCTTT GCACTAGAGG 901 ATTTTAAACA AGCTGCACTG ATAAGCCGGA CTAACGGGAG CCTTTGTCAC GCCACTGCCA 961 TGTGCCATCA CAGAATTAAT GAGTTTGAAG AAGCTGTCAA TTTCTTTACT TGGGCTCTTA 1021 AAATTAACCC ATGTTTTCTG GATGCTTATG TTGGACGGGG AAATTCTTAC ATGGAATACG 1081 GTCATGATGA AGCCACCAAG CAAGCACAGA AAGACTTTCT GAAAGCACTG CATATTAATC 1141 CAGCATACAT AAAAGCCAGA ATTAGTTTTG GCTATAATTT GCAGGCCCAA GGAAAATTCC 1201 AGAAAGCTTG GAACCACTTT ACCATTGCCA TAGATACTGA TCCAAAGAAC TACCTAGCCT 1261 ATGAAGGAAG AGCTGTGGTC TGTCTTCAGA TGGGTAATAA TTTTGCTGCA ATGCAGGATA 1321 TTAATGCTGC CATGAAGATC AGTACTACAG CAGAATTCTT AACAAATCGT GGGGTGATTC 1381 ATGAGTTTAT GGGCCACAAA CAGAATGCAA TGAAAGACTA CCAAGATGCA ATTACTCTAA 1441 ACCCCAAGTA CTCGCTGGCT TACTTTAATG CAGGAAATAT CTACTTTCAC CACAGGCAGT 1501 TTTCCCAGGA AGAAAGTCTT GGCCTGGCTT GGAGTCTTTC CCTTGACTCA TTTCTGAGAA 1561 CTGGGGGTGC AACCTTCTCT TCAGGAGTGA ATCCTCTTCA AACTCTTCAC AGAAGGATGT 1621 CAATTCTGTC CCCCCTCCCC CCAACCTGTC CCAGGGATGA GATGGATTTT ACATCTTTGC 1681 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1741 aac