Construct: ORF ccsbBroadEn_13084
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011259.1_s300c1, BRDN0000392323
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AEBP2 (121536)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 121536 | AEBP2 | AE binding protein 2 | NM_001267043.2 | 91.5% | 90.3% | (many diffs) |
| 2 | human | 121536 | AEBP2 | AE binding protein 2 | XM_017018806.1 | 88.5% | 88.6% | 0_1ins63;822_864delinsG |
| 3 | human | 121536 | AEBP2 | AE binding protein 2 | NM_153207.5 | 58.6% | 58.6% | 1_624del |
| 4 | human | 121536 | AEBP2 | AE binding protein 2 | NM_001114176.2 | 56.9% | 57% | 1_624del;1509_1551delinsG |
| 5 | human | 121536 | AEBP2 | AE binding protein 2 | NM_001363736.2 | 52% | 49.7% | (many diffs) |
| 6 | human | 121536 | AEBP2 | AE binding protein 2 | XM_011520560.2 | 17% | 16.8% | 1_624del;879_880insGTATT;882_883ins622 |
| 7 | mouse | 11569 | Aebp2 | AE binding protein 2 | NM_178803.2 | 85.3% | 91.5% | (many diffs) |
| 8 | mouse | 11569 | Aebp2 | AE binding protein 2 | NM_001309436.1 | 81.3% | 87.3% | (many diffs) |
| 9 | mouse | 11569 | Aebp2 | AE binding protein 2 | NM_001309437.1 | 81.3% | 87.3% | (many diffs) |
| 10 | mouse | 11569 | Aebp2 | AE binding protein 2 | XM_006506909.3 | 81.3% | 87.3% | (many diffs) |
| 11 | mouse | 11569 | Aebp2 | AE binding protein 2 | NM_001005605.2 | 54.5% | 58.4% | (many diffs) |
| 12 | mouse | 11569 | Aebp2 | AE binding protein 2 | XM_006506906.1 | 54.5% | 58.4% | (many diffs) |
| 13 | mouse | 11569 | Aebp2 | AE binding protein 2 | NM_009637.4 | 53.6% | 57.5% | (many diffs) |
| 14 | mouse | 11569 | Aebp2 | AE binding protein 2 | XM_006506905.3 | 53% | 56.8% | (many diffs) |
| 15 | mouse | 11569 | Aebp2 | AE binding protein 2 | XM_017321346.1 | 22.4% | 23.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 951
- ORF length:
- 885
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GTCGGATGGG GAACCCCTGA GCCGCATGGA CTCGGAGGAC AGCATAAGCA 121 GTACTATAAT GGATGTAGAC AGCACAATTT CCAGTGGGCG TTCAACTCCA GCAATGATGA 181 ATGGACAAGG AAGCACTACT TCTTCAAGCA AAAATATTGC CTATAATTGT TGTTGGGACC 241 AGTGCCAGGC TTGCTTCAAC TCTAGCCCAG ATCTGGCAGA TCACATCCGT TCCATACATG 301 TAGATGGTCA GCGAGGAGGG GTATTTGTTT GCTTATGGAA AGGTTGTAAA GTATATAACA 361 CTCCATCTAC CAGTCAAAGT TGGTTACAAA GGCATATGCT GACACACAGT GGAGACAAAC 421 CTTTCAAGTG TGTTGTTGGT GGCTGCAATG CCAGCTTTGC TTCTCAGGGA GGGCTAGCTC 481 GTCATGTACC CACACACTTC AGTCAGCAGA ACTCCTCAAA AGTTTCTAGC CAGCCAAAGG 541 CCAAAGAAGA ATCTCCTTCT AAAGCTGGAA TGAACAAAAG GAGGAAATTA AAGAACAAAA 601 GACGACGCTC ATTACCACGG CCACATGATT TCTTCGATGC ACAAACACTG GATGCGATAA 661 GACATCGAGC CATATGCTTT AACCTCTCAG CTCATATAGA AAGTTTAGGG AAGGGACACA 721 GTGTTGTTTT TCATAGTACT GTAATAGCTA AGAGAAAAGA AGATTCTGGG AAGATCAAAC 781 TTTTGCTTCA TTGGATGCCT GAAGACATTC TGCCTGATGT GTGGGTGAAT GAAAGTGAAC 841 GACATCAGTT AAAAACTAAA GTAGTTCATT TATCAAAGCT ACCCAAAGAT ACTGCCTTGC 901 TTTTGGACCC AAACATATAC AGAACAATGC CGCAGAAGAG GTTGAAGAGG TACCCAACTT 961 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac