Construct: ORF ccsbBroadEn_13115
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016944.1_s300c1, BRDN0000392726
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR88 (126248)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126248 | WDR88 | WD repeat domain 88 | XM_011526449.2 | 97.2% | 94.9% | (many diffs) |
| 2 | human | 126248 | WDR88 | WD repeat domain 88 | NM_173479.4 | 89.1% | 87.9% | (many diffs) |
| 3 | human | 126248 | WDR88 | WD repeat domain 88 | NR_135565.2 | 70.3% | 1_56del;1335_1817del | |
| 4 | human | 126248 | WDR88 | WD repeat domain 88 | XM_011526450.2 | 66.6% | 63% | (many diffs) |
| 5 | human | 126248 | WDR88 | WD repeat domain 88 | XM_017026282.1 | 65% | 64.5% | (many diffs) |
| 6 | human | 126248 | WDR88 | WD repeat domain 88 | XM_017026283.1 | 65% | 64.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1344
- ORF length:
- 1278
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACATAAAAG 61 TTGGCATGGC CTCCCCGCCG CGGTGCTCCC CGACAGCCCA TGACAGGGAA TGCAAGTTGC 121 CGCCACCCTC CGCCCCCGCC AGCGAGTATT GTCCCGGCAA GCTGTCCTGG GGGACCATGG 181 CGAGGGCCTT AGGCCGCTTC AAGCTGTCGA TCCCGCACAC GCACCTGCTG GCCACCCTCG 241 ACCCCCTGGC CTTGGACAGG GAACCACCAC CGCATCTGTT GCCTGAGAAG CACCAGGTGC 301 CGGAGAAATT GATCTGGGGC GACCAGGACC CTCTCTCCAA GATCCCATTT AAAATTCTGA 361 GTGGGCACGA GCACGCTGTG AGCACCTGCC ACTTCTGTGT GGATGACACA AAGCTCCTCA 421 GTGGCTCCTA TGACTGCACT GTGAAGCTGT GGGATCCGGT GGACGGTTCT GTGGTTCGCG 481 ATTTTGAGCA CAGGCCCAAA GCTCCTGTTG TAGAGTGCAG CATCACCGGC GACAGCAGCA 541 GAGTCATTGC CGCATCCTAT GATAAGACAG TGAGGGCCTG GGACCTGGAG ACAGGCAAGC 601 TGCTGTGGAA GGTCAGGTAT GATACCTTCA TCGTCTCCTG TAAGTTTTCT CCTGATGGTA 661 AATACGTGGT CTCAGGCTTC GACGTGGATC ATGGAATCTG CATAATGGAC GCCGAGAACA 721 TCACCACCGT TTCCGTCATC AAAGATCATC ACACAAGGTC CATCACGTCA TGCTGCTTTG 781 ACCCCGACAG CCAGAGGGTG GCTTCTGTCT CATTGGACAG GTGCATCAAG ATCTGGGATG 841 TTACATCCCA GGCCACGCTG CTCACCATCA CTAAGGCACA TTCCAATGCA ATCTCAAACT 901 GCTGTTTTAC CTTCAGTGGC CATTTCCTGT GTACAAGCTC CTGGGATAAA AACTTAAAAA 961 TATGGAACGT CCACACAGGG GAGTTTCGAA ACTGTGGAGC CTGTGTGACT CTGATGCAGG 1021 GCCATGAAGG TTCTGTCAGT TCCTGTCACT TTGCCAGAGA CAGCTCTTTT CTCATTTCTG 1081 GAGGGTTTGA TAGGACTGTG GCTATTTGGG ATGTAGCAGA AGGCTACCGG AAGCTCTCTT 1141 TGAAGGGCCA TAATGACTGG GTGATGGATG TTGCCATTAG CAACAACAAG AAATGGATCC 1201 TGTCTGCTTC CAAGGATAGG ACCATGAGAC TGTGGAATAT TGAAGAAATT GATGAAATTC 1261 CTTTGGTAAT CAAGTACAAA AAGGCCGTGG GCTTAAAGTT GAAACAGGAA AAGAAAGAGG 1321 CCTACCTGAA GCTGAAGCAA GGATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1381 agcattgctt atcaatttgt tgcaacgaac