Construct: ORF ccsbBroadEn_13116
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003963.1_s300c1, BRDN0000393609
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC25 (126364)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126364 | LRRC25 | leucine rich repeat contain... | NM_145256.3 | 32.7% | 7.8% | 1_301del;602_915del |
| 2 | human | 126364 | LRRC25 | leucine rich repeat contain... | XM_005259739.4 | 32.7% | 7.8% | 1_301del;602_915del |
| 3 | human | 126364 | LRRC25 | leucine rich repeat contain... | XR_001753602.2 | 14.4% | 1_503del;804_2079del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 366
- ORF length:
- 300
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GCGCTGGCCG CCCGCTGTGA CCTTGACCTG CAGGCCGACT GCAACTGTGC 121 CCTGGAGTCC TGGCACGACA TCCGCCGAGA CAACTGCTCT GGCCAGAAGC CTCTGCTCTG 181 CTGGGACACA ACCAGCTCCC AGCACAACCT CTCTGCCTTC CTGGAGGTCA GCTGCGCCCC 241 TGGCCTGGCC TCTGCAACTA TCGGGGCAGT GGTGGTCAGC GGGTGCCTGC TTCTTGGACT 301 TGCCATCGCT GGCCCTGTGC TGGCCTGGAG ACTCTGGCGA TGCCGAGTGG CCAGAAGCCG 361 GGAGCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 421 gttgcaacga ac