Construct: ORF ccsbBroadEn_13143
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001914.1_s300c1, BRDN0000390019
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XIRP2 (129446)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 129446 | XIRP2 | xin actin binding repeat co... | XM_017003309.1 | 3.8% | 3.8% | 1_9540del |
| 2 | human | 129446 | XIRP2 | xin actin binding repeat co... | NM_001199144.2 | 3.8% | 3.8% | 1_9597del |
| 3 | human | 129446 | XIRP2 | xin actin binding repeat co... | NM_152381.5 | 3.6% | 3.6% | 1_10263del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 450
- ORF length:
- 384
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGCATTTGAG AGTCAAATTG TTGAGTCGAA GATGAAAACC TCTTCATCAC 121 ATAGCTCAGA AGCTGGCAAA TCTGGCTGTG ACTTCAAGCA TGCCCCACCA ACCTATGAGG 181 ATGTCATTGC TGGACATATT TTAGATATCT CTGATTCACC TAAAGAAGTA AGAAAAAATT 241 TTCAAAAGAC GTGGCAAGAG AGTGGAAGAG TTTTTAAAGG CCTGGGATAT GCAACCGCAG 301 ATGCTTCTGC AACTGAGATG AGAACCACCT TCCAAGAGGA ATCTGCATTT ATAAGTGAAG 361 CTGCTGCTCC AAGACAAGGA AATATGTATA CTTTGTCAAA AGACAGTTTA TCCAATGGAG 421 TGCCTAGTGG CAGACAAGCA GAATTTTCAT ACCCAACTTT CTTGTACAAA GTtggcatta 481 taagaaagca ttgcttatca atttgttgca acgaac