Transcript: Human XM_017003309.1

PREDICTED: Homo sapiens xin actin binding repeat containing 2 (XIRP2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
XIRP2 (129446)
Length:
12170
CDS:
308..10234

Additional Resources:

NCBI RefSeq record:
XM_017003309.1
NBCI Gene record:
XIRP2 (129446)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017003309.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000129665 CCCAACCTCTTGATTCAATTA pLKO.1 2766 CDS 100% 13.200 18.480 N XIRP2 n/a
2 TRCN0000149813 GCCGTTGGACACAATTAACAA pLKO.1 1915 CDS 100% 5.625 7.875 N XIRP2 n/a
3 TRCN0000149166 GCAGTCCATTAGATGGATCTT pLKO.1 1306 CDS 100% 4.950 6.930 N XIRP2 n/a
4 TRCN0000146624 CGAAATTACTTCTTCCCGTAA pLKO.1 376 CDS 100% 4.050 5.670 N XIRP2 n/a
5 TRCN0000129738 CCACAGCTATGAAAGTCATAA pLKO.1 7762 CDS 100% 13.200 9.240 N XIRP2 n/a
6 TRCN0000146448 CCAGGTCTCTAAGTGAACATT pLKO.1 9819 CDS 100% 5.625 3.938 N XIRP2 n/a
7 TRCN0000146284 CCTGTCAGATATGGAATGTAA pLKO.1 6931 CDS 100% 5.625 3.938 N XIRP2 n/a
8 TRCN0000149471 GCAGCTTCAGAAGACAAAGAT pLKO.1 7523 CDS 100% 5.625 3.938 N XIRP2 n/a
9 TRCN0000148124 GCTACAGAATGCTCTTTGAAA pLKO.1 3516 CDS 100% 5.625 3.938 N XIRP2 n/a
10 TRCN0000128636 CCAAGCAGATTAAGACTGAAA pLKO.1 747 CDS 100% 4.950 3.465 N XIRP2 n/a
11 TRCN0000148468 CCACTGGATCAGATTTCTGAA pLKO.1 3767 CDS 100% 4.950 3.465 N XIRP2 n/a
12 TRCN0000130809 GCAAGCACTGAATGTAGTCAT pLKO.1 7850 CDS 100% 4.950 3.465 N XIRP2 n/a
13 TRCN0000148007 GCCATTGGACTCAATGAATAA pLKO.1 1567 CDS 100% 1.320 0.924 N XIRP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017003309.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13143 pDONR223 100% 3.8% 3.8% None 1_9540del n/a
2 ccsbBroad304_13143 pLX_304 0% 3.8% 3.8% V5 1_9540del n/a
3 TRCN0000475360 TTTCTATCTAGTATCCCATTTACG pLX_317 100% 3.8% 3.8% V5 1_9540del n/a
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