Construct: ORF ccsbBroadEn_13150
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009586.1_s300c1, BRDN0000398279
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC173 (129881)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 129881 | CCDC173 | coiled-coil domain containi... | NM_001085447.2 | 98.9% | 98.9% | 1_18del |
| 2 | human | 129881 | CCDC173 | coiled-coil domain containi... | XM_011510589.1 | 95.7% | 94.6% | (many diffs) |
| 3 | human | 129881 | CCDC173 | coiled-coil domain containi... | XM_011510590.1 | 86.2% | 86.2% | 0_1ins225 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1707
- ORF length:
- 1638
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGGTACGG TTTGGACGGC GCTGTGGACG GGCGAAGGAA AGTACAGAAA 121 TAAGAAACTC TGAAGAAGAT CAAGTTCTCT ATCTGCCTCT TCTACCTAGC AAAGTAGATC 181 TCCAGCAGGT CACCATAATT CCACACGATG AGTGGAAAAG GATTCAAGAT AGCCTTGACA 241 GGTTGACAAG AGAAGCAGCA TGCCTCCGTG CAGAAAGAAA GGCAAAGAAA GAAATGCATT 301 TGCGATCTCA AGAAGTGGTA AAACACTGGA CTAATACATA TGCAGGGATG AAAGAACAGA 361 AACTTGAAGC CAAAAAGAAG CGTGATGAAG AAATAGAGGC AGAAAGACAA ATTCTTGATC 421 TGGAAGAAGA AATATACAAA CAAGGAAAAA GAAAAAAGGC CATTGAAAAT GCAAAGCAAT 481 ATCAATTTTA CCAGACAGAA AGAGTGAAAA ACTTTCATTC GGGACTTCTT CTTAGTAGAG 541 TTATGAAAGA ACGTGATGCC CAGATTGAAT TCCGAAAGAG TAAGATAAAA TCAGATAAAA 601 AATGGGAGGA ACAGTTGAAA CTCAACATTG AAAAAGCTTT TAAAGAAGAA CAAGAAAAAG 661 CAGAAAAACG ACACAGAGAA AGGGTGGCTC TTGCCAAAGA TCATCTAAAA CAAATAAAGG 721 AACATGAGGA AGAAGAGGAA AGAAGGAAAA AATATGAAGA AAAAGATGCT GAGGAAATAA 781 AGCGACAGAA TGCATTATAT GAAATTGAAA TGAGAAAAAA ACTAGAAAAG AAAAGAGAAG 841 AGATGCATGA AAGCAGGAGA CGGTTTCTTG AACATATGCA GGATAAACAT ATTATCAAAG 901 CTGTAGAACA GCAGCAGCAA GAGGAAGAAG ATGAAAAGAT GAGAAAATTC ATCAAAGCAA 961 AAAAGCGTCT TATACAAATG GGGAAAGAAA AAGAGGCTGA AACACACAGG CTTATGGAGA 1021 AACGAAGAGA AAGAATACAT AACTTCCTGA GTGAACTGTT GAAAGAGAAA CTTGACAATG 1081 AAGATATGAT TATTGCTAGA GATATTGCAG AAGCTGAGGC TGAATGGGAA AAAAGAGAAA 1141 GAGAAAAAGA TGAAAAAAAC AAAGCAGAAT TAAAAACAAT TGCAGAATAT CGAGCCATTG 1201 TGATGAAAAA TAAAGAGGAA GAAGAAAGAC AAAGAAAAAT AGAGGCTAAA GAACAATTGC 1261 TGGCTGTCAT GAAAGCAGAT CAGATTTTCT GGGAACATGA AAAGGAGAAA AAATGCAAAG 1321 CTGATAAAGA ACATCAAGAG GTTCAAGATG CCCATATTCA GCAAATGGCC AAAAATAAGT 1381 TTAATGCAAA GCAAGCAAAA CAAGCAGAAT TAGATTATTG CAGACTTACT GAAGCTCTTG 1441 TGGCTGAAAA GGAGAAAGAA TTTCAGGACT ATGCCAGAGA GGTAATTGAA CTTGAATCGG 1501 AAACAACAAA TAAATATATT TACCCTCTTG TAAAAGCTGT ACAGGAAGGA CCTGGAGGTG 1561 GCCGTGGACC AGTGTTTGTG GACAGAGGTG GATTAAGACC CAGCTATCAG GCAAATGATG 1621 TTACTGGAGT CCAGCTCCCT TTTTATAACT CTCAGGGACC AAAATATAAT TTTCAAAAGT 1681 CAAAGAGAAG GCTAGGTTTT ACATGGTTGC CAACTTTCTT GTACAAAGTt ggcattataa 1741 gaaagcattg cttatcaatt tgttgcaacg aac